ISSN
0974-3618 (Print) www.rjptonline.org
0974-360X (Online)
RESEARCH ARTICLE
A Chalcone Annulated Pyrazoline Conjugates as a Potent Antimycobacterial Agents: Synthesis and in Silico Molecular Modeling Studies
Prabha T*, Aishwaryah P, Manickavalli E, Chandru R, Arulbharathi G, Anu A, Sivakumar T
Department of Pharmaceutical Chemistry, Nandha College of Pharmacy, Koorapalayam Pirivu, Pitchandam Palayam Post, Erode-638052, Tamilnadu, India.
*Corresponding Author E-mail: drtpappa@yahoo.com
ABSTRACT:
Pyrazolines are well known and important nitrogen containing 5-membered heterocyclic compounds could effective against diversity of biological issue in which the tuberculosis is one of them. An effort was made to design and synthesis the series of chalcone annulated pyrazoline conjugates as a target candidate for antimycobacterial activity against Mycobacterium tuberculosis. The synthesized compounds were subjected to characterization by diverse analytical methods and to foreword in silico screening study for testing their antimycobacterial activity via their docking simulation on bioinformatics software, Molecular Operating Environment 2009.10. suite. The wonderful number of interactions with active site residues coupled with favorable binding energy state that these target molecules may serve as an effective replacement agent for the antimycobacterial drugs. The preliminary SAR of the chalcone annulated pyrazoline conjugates reveals that compounds possessing electron withdrawing groups such as halogen atom (P1, P2) in its structure favors better activity and anchored tightly inside the active site canyon (Site I) of the protein. It is also observed that the presence of methoxy and dimethylamino substitutions at aromatic ring (P3, P4 & P7) doesn't seem to influence the activity, this is may be due to its high electro negativity and the presence of lone pair of electron with this substitutions. Thus, the synthesized chalcone annulated pyrazoline conjugates might serve as the best drug candidate for the existence menacing pathogen Mycobacterium tuberculosis. The predictive model can be employed further for virtual screening of new compounds in this series.
KEYWORDS:Antimycobacterial activity, chalcone, pyrazoline conjugates, MOE 2009.10., Docking simulation.
INTRODUCTION:
Tuberculosis (TB), is an airborne infectious disease caused predominantly by Mycobacterium tuberculosis (MTB)1,2, it poses a major public health risk owing to the extended period of treatment (around 6–9 months), associated with HIV infection, the emergence of multidrug resistant, etc. Worldwide, TB is one of the top 10 causes of death and the leading cause from a single infectious agent (above HIV/AIDS).
Received on 14.03.2019 Modified on 13.04.2019
Accepted on 18.05.2019 © RJPT All right reserved
Research J. Pharm. and Tech 2019; 12(8): 3857-3865.
DOI: 10.5958/0974-360X.2019.00663.2
In 2017, TB caused an estimated 1.3 million deaths among HIV-negative people and there were an additional 300000 deaths from TB among HIV-positive people. Globally, the best estimate is that 10.0 million people developed a TB disease in 2017 ranging 5.8 million men, 3.2 million women and 1.0 million children. There were 27% cases in India were reported for TB among the all over 22 countries. Drug-resistant TB continues to be a public health crisis. The best estimate is that, worldwide in 2017, 558000 people have developed a TB that was resistant to rifampicin (RR-TB), the most effective firstline drug, and of these, 82% had multidrug-resistant TB (MDR-TB)2. In spite of enormous efforts to develop the antimycobacterial drug molecules, tuberculosis still constitutes the leading killer disease. Therefore, the discovery and development of new types of anti TB agents performing on novel drug targets is urgently needed. Only a handful of compounds have entered human trials, and it’s notable that the Nix-TB trial is the first TB clinical trial to test a new drug combination such as pretomanid, bedaquiline and linezolid, which has the possibility of being a shorter, all oral, and affordable treatment for TB. The TMC207 (bedaquiline), OPC-67683 (delamanid) and PA-824 (pretomanid) and AZD5847 are under development as potential TB drugs3. Hence, from the above facts necessitated an urgent need to develop the novel structural moieties having antimycobacterial properties.
Chalcones (1,3-diphenyl-2-propen-1-ones) are a major sub class of flavonoids that possess the open chain flavonoids in which the two aromatic rings are merged by a three-carbon α, β-unsaturated carbonyl system4. They have been reported to own the excess of medicinal benefits such as anti‐bacterial5,6, antiulcer7, antifungal8, antioxidant9,10, vasodilatory11, antimitotic12, antimalarial13,14, antileshmanial15, and inhibition of chemical mediators release, inhibition of leukotriene B416, inhibition of tyrosinase17, antiplasmodial18, and inhibition of aldose reductase19, anti-inflammatory20,21, anti-gout22, anti-histaminic23, anti-oxidant24, anti-obesity25, anti-protozoal26, hypnotic27, anti-spasmodic28 and etc. Apart from this, fascinatingly the many natural product inspired chalcone analogues are exhibiting the significant antimycobacterial activity29.
The chemistry of chalcones remains fascination among the researchers in the present scenario due to the large number of replaceable hydrogens that allows a large number of derivatives and a variety of promising biological activities. Recently, several research groups successfully demonstrated their mode of action by identifying their molecular targets30. A good safety profile, possibility of oral administration, and easy synthesis are the major factors contributing to the growing interest in exploring the pharmacological activities of chalcones. Despite medicinal applications of chalcones, their wide bioactivity spectrum indicates a potentially promiscuous target profile, which presents a challenge for clinical development31. This is largely attributable to the electrophilic nature of the α,β-unsaturated carbonyl system32.
In connection with this, the chalcone are considered as an extremely good scaffold as key starting materials for the syntheses of different classes of nitrogen containing heterocyclic compounds such as pyrazolines, oxazoles, isoxazoles, thiophenes and pyrimidines, etc.33 Along with nitrogen containing five membered heterocycles, considerable attention has been focused on pyrazolines conjugates owing to their fascinating biological activities. The pharmaceutical importance of these compounds lies in the fact that they can be effectively utilized as antibacterial, antifungal, antiviral, antiparasitic, antitubercular, herbicidal, fungicidal, analgesic, antioxidant, antipyretic, insecticidal, anticancer, antitumor, antidiabetic, anticonvulsant, antidepressant and anti-inflammatory agents34,35. Pyrazolines have been largely studied owing to their pharmacological activities36,37, which includes anti-tumor38, anti-tubercular39, anti-inflammatory40,41,42, anti-parasitary43, anti-depressive, anticonvulsant44, antimicrobial45,46,47 antinociceptives48, anti fungal49, anti oxidant50 and nitric oxide synthase inhibitors, associated with diseases such as alzheimer, and inflammatory arthritis51. Furthermore, Sameer et al.,52 and Ali et al.,53 found that, the pyrazole-isoniazid conjugates have an in-vitro activity against Mycobacterium tuberculosis. Similarly, Sangeetha et al.,54 synthesized some heterocyclic chalcone derivatives by using 2,4-dinitro phenyl hydrazine, but they have tested for their antimicrobial activity. On the other hand, there is a reasonable and limited work on pyrazole conjugates as an antimycobacterial agents which is obtained by using 2,4 dinitro phenyl hydrazine.
In this context, and in view of our long standing interest in the chemistry of the privileged chalcone scaffold annulated pyrazoline motif, the study encouraged us to further explore the pyrazoline motif as an active pharmacophore for further diversification to exploit its anti TB potential. A classical synthesis of these compounds involves the base-catalyzed aldol condensation reaction of ketones and aldehydes to give α,β-unsaturated ketones (chalcones), which undergo a subsequent cyclization reaction with hydrazines affording pyrazolines35. Herein, the work describes the synthesis of some chalcone scaffold annulated pyrazoline, and their in silico screening studies against mycobacterium tuberculosis. To the best of our knowledge, there is limited reports on the in silico study on antimycobacterial activities of these chalcone scaffold annulated pyrazoline motif have been reported. However, there are numerous examples of nitrogen containing heterocycles being used to treat TB, for example Clofazimine, Isoniazid and Pyrazinamide. These compounds provide structural priority that the chalcone scaffold annulated pyrazoline analogues may lead to the generation of novel anti-TB therapeutics.
MATERIAL AND METHODS:
All the chemicals in this synthesis were of AR and LR grade and were obtained from Merck, Hi-Media and Sigma-Aldrich, SD Fine chem., Mumbai. All the chemicals were used as received without further purification.
Experimental section:
Melting points were determined in open capillaries on a Thomas Hoover apparatus and are uncorrected. The synthesized compounds were characterized by the following methods IR spectra of synthesized compounds were recorded on Schimadzu (8300, Kyoto, Japan) fourier transform infrared spectrophotometer in the range of 4000 cm-1 – 400 cm-1 using KBr pellet technique. The proton NMR Spectra were recorded using BRUKER 300MHz NMR Spectrometer using the solvent deuterated chloroform. Chemical shifts (d) were recorded in parts per million (ppm) and trimethylsilane used as an internal standard.
Synthesis of Chalcone Scaffolds:
The variety of chalcones has an easy chemistry which facilitates to synthesize the compounds with assorted substitutions. At this time, a diversity of methods and schemes are available for the synthesis of chalcone conjugates55,56. This reaction can take place under various reaction conditions. In our research, the chalcones were prepared by the reaction of equimolar amount of acetophenone and various aromatic aldehydes with activating and deactivating groups in ethanol using a 40% NaOH solution as a catalyst to yield the various chalcone scaffold. (Scheme 1).
Synthesis of Pyrazoline conjugates57:
An equimoloar mixture of assorted Chalcones (0.02 mol), 2,4-dinitro phenyl hydrazine (0.02 mol), ethanol (25 mL), followed by the addition of 3 drops of concentrated sulphuric acid and was refluxed for 6-8 hours. The completion of the reaction was monitored by TLC (Hexane:Methanol (9:1). After completion of the reaction, the mixture was cooled and poured into crushed ice to get the chalcone annulated pyrazoline conjugates as a final product. The precipitate obtained was filtered, washed and recrystallized using absolute ethanol. (Scheme 1, Table 1).

Scheme 1: Synthetic scheme of chalcone annulated pyrazoline conjugates
Table 1: Substitution pattern of chalcone annulated pyrazoline conjugates (P1-P7)
|
Code |
R |
Target compounds |
Code |
R |
Target compounds |
|
P1 |
|
|
P4 |
|
|
|
P2 |
|
|
P5 |
|
|
|
P3 |
|
|
P6 |
|
|
|
P7 |
|
|
|||
Computational studies:
In modern drug designing scenario, the molecular docking is commonly used for the understanding of target - receptor binding interaction and is quite often used to predict the binding orientation of target molecule of the lead with their protein receptor in order to find out the affinity of that target compound1. Keeping this in mind, the work undertook to design the novel antimycobacterial candidates, which will target promisingly with the enzymes involved in the biosynthesis of microbial cell wall. In order to rationalize the biological results of our compounds, an in silico molecular docking studies with the enoyl-acyl carrier protein reductase (InhA) of MTB were carried out to determine the best conformation. Enoyl-ACP (acyl-carrier protein) reductase (ENR), is a key enzyme of the type II fatty acid synthesis (FAS) system.
Software used:
The designed structures of seven chalcone annulated pyrazoline conjugates were generated by using Marvin_windows-x64_18.8 version. Marvin Sketch is an advanced chemical tool for illustrating the chemical structures, queries, reactions, and etc.58. Then the structures were viewed on Marvin Viewer screen to generate the SMILES notation and to IUPAC name of the synthesized compounds. The target ligand files for the molecular docking studies were built on Molecular Operating Environment (MOE 2009.10) by Chemical Computing Group59.
Preparation of target ligand files:
The molecular geometries were drawn and correct 3D structures were ensured and were followed by energy optimization at a standard MMFF94 force field level, with a 0.0001 kcal/mol energy gradient convergence criterion60,61. The molecule builder of MOE 2009.10 program was used for this purpose and after building the molecule, it was energy minimized and potential energy, partial energy was corrected and then it was saved as molecular database (.mdb) file in a local directory for the further process.
Preparation of macromolecule:
The MTB enoyl acyl carrier protein reductase (InhA) is encoded by the inhA gene plays an important role in the MTB fatty acid synthesis pathway as an essential NADH dependent enzyme in the mycolic acid biosynthetic pathway. Mycolic acids are the major components of MTB cell envelope, and they form an effective permeability barrier to protect mycobacteria from antimicrobial agents. Therefore, inhibition of InhA could block biosynthesis of mycolic acids, resulting in mycobacteria death. Obviously, InhA is a well validated MTB target, so identify direct inhibitors of InhA would have tremendous clinical value in combating TB62.
The crystal 3D structure of enzymes enoyl- acyl carrier protein reductase (PDB code 2NSD) was retrieved from RCSB Protein Data Bank. These pdb files were imported into MOE suite in which the receptor preparation module was used to prepare the protein. All the bound water molecules and hetero atom were removed from the complex by using sequence (SEQ) window which is default in molecular operating environment programme. Both polar and non-polar hydrogens were added and 3D structure was corrected. The 3-D protonated structure was energy minimized. Since the protein was devoid of associated ligand, so the pocket was identified using the active site finder module of the molecular operating environment. In order to visualize the binding pocket, alpha spheres were created followed by the generation of dummy atoms on the centers of these spheres. The pockets were found to be deep small canyons lined with the key residues including both hydrophobic and hydrophilic amino acids.
Docking methodology:
With an objective to explore the potential putative targets of the synthesized compounds among the validated Mycobacterium receptors, we performed a docking analysis with known biological targets reported so far for the chalcone scaffold derived anti-tubercular compounds. The optimized target ligands were docked with the enzymes enoyl-ACP reductase (PDB: 2NSD) protein using the MOE. 2009.10 suite. For docking simulations, the placement was set as triangular matcher, rescoring was set as London dG, the number of retaining was set as 10 and the refinement was set as forcefield on molecular operating environment suite to generate 10 poses of each target ligand confirmations. As a result of docking run, the mdb. output files were created with scoring and multiple conformations of each compound. All the docked conformations were analyzed and the best scored pose for each compound was selected for further interaction studies. Besides, the ligand-receptor interaction followed by surface analysis of the selected best pose ligand molecule was generated on molecular operating environment suite and viewed for interpretation.
RESULT AND DISCUSSION:
The new series of chalcone annulated pyrazoline conjugates were synthesized and evaluated for their in silico antimycobacterial activity. The synthesized compounds were obtained in the reasonable yield. The percentage yield and melting point of the synthesized compounds were recorded and presented uncorrected. The key reactions involved are the intermediate formation of hydrazones and subsequent addition of N-H on the olefinic (CH=CH) bond that forms the ring-closed final products of pyrazoline conjugates. In the nuclear magnetic resonance spectra (1H-NMR) the signals of the respective protons of the final title compounds were verified on the basis of their chemical shifts and multiplicities. Both analytical and spectral data (IR and 1H-NMR) of all the synthesized compounds were in full agreement with the proposed structures. IR and 1H NMR Spectral data of the synthesized conjugates were given below. The IR spectra of the compounds show the appearance of C=C (olefinic), C=N, and N-CH stretching bands at 1580–1600, 1530–1600 and 3272-3300 cm-1 respectively due to the ring closure. The previous report of 1H-NMR spectra of chalcone showed an olefinic proton as appeared as doublets at about δ 6.75 and 7.18 ppm respectively. After the ring closure, the CH proton of pyrazoline showed at around δ 5.81-6.02 ppm.
P1: 5-(2-chlorophenyl)-1-(2,4-dinitrophenyl)-3-phenyl-4,5-dihydro-1H-pyrazole. Orange powder. Yield: 80%; mp. 190-192ºC. IR (vmax in cm-1): 1595 (Aro C=C str); 3020 (Ar-H str); 1514 (Ar-NO2); 1350 (N=O str); 3272 (N-CH); 1459 (-CH2-); 1583 (C=N); 1216 (C-C); 2900 (C-H); 798 (-Cl-). 1H NMR (CDCl3, 300 MHz): 2.99-3.15 (d, 2H, -CH2), 6.02 (1H, d, -CH), 8.43 (dd, Ar-H), 8.88 (d, Ar-H), 7.12 – 7.72 (m, 10H, Ar-H).
P2: 5-(4-chlorophenyl)-1-(2,4-dinitrophenyl)-3-phenyl-4,5-dihydro-1H-pyrazole (P2): Reddish Orange powder. Yield: 85%; mp. 194-202ºC. IR (νmax in cm-1): IR(cm-1): 1583 (Aro C=C str); 3031 (Ar-H str); 1545 (Ar-NO2); 1268 (N=O str); 3278 (N-CH); 1483 (-CH2-); 1598 (C=N); 980 (C-C); 2860 (C-H); 800 (-Cl). 1H NMR (CDCl3, 300 MHz): 3.07-3.13 (d, 2H, -CH2), 5.94 (1H, d, -CH), 8.43 (dd, Ar-H), 8.88 (d, Ar-H), 7.12 – 7.72 (m, 10H, Ar-H).
P3: 4-[1-(2,4-dinitrophenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-5-yl]-N,N-dimethylaniline: Crystalline Black powder. Yield: 86%; mp. 212-220oC. IR (νmax in cm-1): 1598 (Aro C=C str); 3010 (Ar-H str); 1567 (Ar-NO2) 1360 (N=O str); 3282 (N-CH);1469 (-CH2-); 1567 (C=N); 1280 (C-C); 2960 (C-H); 1460 (-CH3-); 1220 (N-C). 1H NMR (CDCl3, 300 MHz): 2.73 (s, 3H, -CH3), 2.83-3.65 (d, 2H, -CH2), 5.81 (d, 1H, -CH), 8.43 (dd, Ar-H), 8.88 (d, Ar-H), 6.71 – 7.67 (m, 11H, Ar-H).
P4: 3-chloro-4-[1-(2,4-dinitrophenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-5-yl]-N,N-dimethylaniline: Brownish black. Yield: 65%; mp. 240 oC. IR (νmax in cm-1): 1600 (Aro C=C str); 3050 (Ar-H str); 1570 (Ar-NO2); 1370 (N=O str); 3285 (N-CH);1485 (-CH2-); 1600 (C=N); 1000 (C-C); 2940 (C-H), 1470 (-CH3-); 1220 (N-C); 800 (-Cl-). 1H NMR (CDCl3, 300 MHz): 2.78 (s, 3H, -CH3), 2.77-2.92 (dd, 2H, -CH2), 5.86 (dd, 1H, -CH), 8.43 (dd, Ar-H), 8.88 (d, Ar-H), 6.59 – 7.67 (m, 9H, Ar-H).
P5: 1-(2,4-dinitrophenyl)-5-(2-nitrophenyl)-3-phenyl-4,5-dihydro-1H-pyrazole: Brick Brown Powder. Yield: 70%; mp. 260-263 oC, IR (νmax in cm-1): 1614 (Aro C=C str); 3050 (Ar-H str); 1515 (Ar-NO2); 1330 (N=O str.); 3302 (N-CH);1485 (-CH2-); 1589 (C=N); 1000 (C-C); 1301 (C-H), 2853 (-CH2-); 2920 (NO2). 1H NMR (CDCl3, 300 MHz): 3.08-3.19 (d, 2H, -CH2), 6.14 (d, 1H, -CH); 7.53-8.03 (4H, m, Ar-H); 7.42 -7.67 (5H, m, CH=C-Ar); 8.41 (1H, dd, Ar-H); 8.88 (1H, d, Ar-H).
P6: 4-[1-(2,4-dinitrophenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-5-yl]-2-methoxyphenol: Reddish brown powder. Yield: 80%; mp. 198-200 oC. IR (νmax in cm-1): 1600, ~1500, (Aro C=C str); 3050-3000 (Ar-H str); 1545 (Ar-NO2); 1348 (N=O str); 3300 (N-CH);2860, 1480 (-CH2-); 1530 - 1550 (C=N); 1100 (C-C); 2950 (C-H); 1250-1070 (-OCH3, C-O-C); 1230 (C-O), 3700 (Ar-OH); 1430 (-CH3-) 1526 (NO2); 1319 (NO2). 1H NMR (CDCl3, 300 MHz): 2.86-3.06 (d, 2H, -CH2), 3.79 (s, 3H, -CH3), 5.88 (d, 1H, -CH), 7.67 (d, 1H), 6.98 (d, 1H), 7.79- 8.98 (m, 9H, Ar-H), 5.39 (s, 2H, -OH).
P7: 1-(2,4-dinitrophenyl)-5-(4-methoxyphenyl)-3-phenyl-4,5-dihydro-1H-pyrazole: Brick Red powder. Yield: 70%; mp. 222-230 oC. IR (νmax in cm-1): 1580 (Aro C=C str); 3050 (Ar-H str); 1555, 1368 (Ar-NO2, N=O str); 3298 (N-CH);1457 (-CH2-); 1560 (C=N); 986 (C-C); 2850 (C-H); 1250-1070 (-OCH3, C-O-C); 1050 (C-O). 1H NMR (CDCl3, 300 MHz): 2.84-3.04 (d, 2H, -CH2), 3.74 (s, 3H, -CH3), 5.84 (d, 1H, -CH), 7.14–7.22 (m, 4H, Ar-H), 7.34–7.37 (m, 3H, Ar-H), 7.52 (m, 1H, Ar-H), 7.63–7.67 (m, 2H, Ar-H), 8.13 (d, 1H, CH-), 8.36 (d, 2H, Ar-H).
Result on molecular docking studies of target molecules:
All the docked conformations for each compound were analyzed and it was found that the most favorable docking poses with a maximum number of interactions were those which were ranked the highest score based on the minimal binding energy, which was computed as a negative value by the MOE software. Then considering the root mean square deviation (RMSD) value, generally acceptable range of the RMSD when the model is overlapped to the template is 2 Å. For protein ligand docking 2 Angstroms is good, 1 Angstrom and less is great. But this RMSD value may not be considered as the only criteria for evaluation of the model constructed. Some deviations at times can be considered. Based on this declaration, in this present report, the compounds showed the RMSD value range of between 1.3921 to 3.2598 and this result suggests that the synthesized compounds showed a good RMSD value.
The molecular operating environment software generated docking score of the all the molecules were summarized in Table 2. The most favorable docking poses of the 10 docked conformations for each molecule were analyzed for further investigation of the ligand interactions within the active sites. The wonderful number of interactions with active site residues coupled with favorable binding energy state that these target molecules may serve as an effective replacement agent for the antimycobacterial drugs. The four ligands viz. P1, P2, P5 and P6 (contains electron withdrawing groups substitution) showed a proper binding pattern except the ligands viz. P3, P4 and P7 (contains the lone pair of electrons in its substitution such as, -N(CH3)2 and -OCH3) and anchored tightly inside the active site canyon (Site I) of the protein. The 2D ligand-protein interactions were visualized using the molecular operating environment ligand interaction program for all the molecules are shown in Figure 2a, 2b, 2c and 2d.
Table 2: Docking results for chalcone annulated pyrazoline conjugates with protein PDB: 2NSD.
|
Molecule code |
S |
rmsd_refine |
E_conf |
E_place |
E_score1 |
E_refine |
No. of conf. |
|
P1 |
-24.8788 |
3.2598 |
131.6323 |
-64.2612 |
-11.5202 |
-24.8788 |
10 |
|
P2 |
-25.8044 |
1.7222 |
143.0940 |
-103.4979 |
-10.7813 |
-25.8044 |
9 |
|
P3 |
- |
- |
- |
- |
- |
- |
0 |
|
P4 |
- |
- |
- |
- |
- |
- |
0 |
|
P5 |
-28.4291 |
1.3921 |
166.2374 |
-76.1342 |
-10.3945 |
-28.4291 |
8 |
|
P6 |
-29.0981 |
2.3042 |
143.2405 |
-87.9971 |
-12.2679 |
-29.0981 |
9 |
|
P7 |
- |
- |
- |
- |
- |
- |
0 |
|
Pyrazinamide |
-11.6461 |
0.8911 |
52.4792 |
-52.1948 |
-7.9880 |
-11.6461 |
9 |
S - The final score, rmsd_refine- The root mean squar deviation between the pose before refinement and the pose after refinement, E_conf- The energy of the conformer. E_place - Score from the placement stage, E_score1- Score from the rescoring stage(s), E_refine- Score from the refinement stage and No. of conf- number of conformations generated by ligand.
The best docking poses of among these 7 synthesized conjugates, the best four conjugates viz. P1, P2, P5 and P6 ligand were formed a single cluster inside the active site cleft of the receptor and they showed the best interaction within the receptor and the calculated surface analysis pocket for these compounds were shown in Figure 2a, 2b, 2c and 2d. The synthesized compounds have a highest binding affinity with the receptors, in the narrow range of binding energy for the protein 2NSD is -24.8788 to -29.0981 kcal/mol: London dG was -10.3945 to -12.2679 kcal/mol when compared to the standard drug pyrazinamide was -11.6461 kcal/mol.

Fig. 2a: Ligand Receptor interaction and binding surface of compound P1 with 2NSD

Fig. 2b: Ligand Receptor interaction and binding surface of compound P2 with 2NSD


Fig. 2c: Ligand Receptor interaction and binding surface of compound P5 with 2NSD

Fig. 2d: Ligand Receptor interaction and binding surface of compound P6 with 2NSD

Further, the top docked conformation of this compound depicted a greater alignment with the native ligand pose. Hence it is likely to act as good binder for the enoyl acyl carrier protein reductas receptor in mycobacterium. The key intermolecular interactions between selected compounds and the target protein are depicted in Fig. 2a-2d. In P6 Compound, the Asp148 acts as backbone donor whereas Lys165 acts as side chain acceptor and forms a bond with the H and O of aromatic aldehyde group of the ligand (Fig. 2d). Apart from this bonding, the other compounds viz. P2 and P5 stabilizing intermolecular arene-arene interactions with Phe 149 were also observed.
The number of conformations generated by molecule was between 8 to 10 which indicate that flexibility is an important parameter for the ligand to dock deeply within the binding pocket of enoyl acyl reductase enzyme. The lowest docking score for molecule P6 was -29.0981, which indicate compound is active at this energy of conformation. Further a careful calculation of surface analysis of the binding pocket of this molecule indicated that molecule P6 adopted a position in a hydrophobic cage surrounded by the following amino acids residue such as, Tyr 198 &158, Ile 202, Thr 198 & 158, Met 147, 103, 18 & 199, Phe 149, Ala 191 & 198 and Gly 96 and these were approach closely to the ligand for strong interactions.
The preface SAR of the chalcone annulated pyrazoline conjugates reveals that compounds possessing electron withdrawing groups such as halogen atom in its structure favors better activity (P1, P2). In addition, the activity is being influenced by functional groups present in the chalcone moiety as well. Halogen substitution at aromatic ring, especially chloro substitution enhances the activity (P1, P2). It is also observed that the presence of methoxy and dimethylamino substitutions at aromatic ring (P3, P4 & P7) doesn't seem to influence the activity63, this is may be due to its high electro negativity and the presence of lone pair of electron with this substitutions.
CONCLUSION:
The new series of chalcone annulated pyrazoline conjugates were synthesized and evaluated for their in silico antimycobacterial activity. The key reactions involved are the intermediate formation of hydrazones and subsequent addition of N-H on the olefinic (CH=CH) bond that forms the ring closed final products of pyrazoline conjugates. Further analysis of the synthesized compounds with known chemoinformatics tools unequivocally established their potential as antitubercular compounds. An in silico docking studies of the target molecules as a ligand with enoyl-acyl carrier protein reductase results showed the best docking score were obtained for the target molecules P1, P2, P5 and P6 among this 7 synthesized compounds when compared to the standard drug. Therefore, this effect is due to the presence of heterocyclic analog with electron withdrawing like, -Cl and -NO2 moiety in its structure. Upon docking study results it was quite understood that the compound P6, the Asp148 acts as backbone donor whereas Lys165 acts as side chain acceptor and forms a bond with the H and O of aromatic aldehyde group of the ligand. Apart from this bonding, the other compounds viz. P2 and P5 stabilizing intermolecular arene-arene interactions with Phe 149 were also observed with its target site. Thus, the chemoinformatics analysis using MOE 2009.10. suite suggested that the chalcone annulated pyrazoline conjugates will provide guidelines for future development of novel agent which could act promisingly as an anti-tubercular agents.
AUTHORS CONTRIBUTION:
All Authors have an equal contribution of this work.
CONFLICTS OF INTERESTS:
The authors have no conflicts of interests.
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