Investigation of the Charge Variant Profile of Non-cleavable Conjugated Antibodies
Ayat Abbood1, Hassan Hadi Ali2, Samir Azzat Malik3, Dima AlDiab4, Nasser Thallaj5*
1Department of Medicinal Chemistry and Quality Control, University of Tishreen, Lattaquia, Syria.
2University of Al Mashreq, College of Engineering Technology, Baghdad, Iraq.
3MSC Pharmaceutical Chemistry, College of Pharmacy, University of Mustaqbal, Babylon, Iraq.
4Department of Food and Anlytical Chemistry, University of Tishreen, Lattaquia, Syria.
5Department of Medicinal Chemistry and Quality Control, University of AL-Rachid, Damascus, Syria.
*Corresponding Author E-mail: profthallaj@gmail.com
ABSTRACT:
This research aimed to analyze the charge variant profiles of monoclonal antibodies (mAbs) conjugated to maytansine derivatives or tomaymycin compounds via a non-cleavable linker, utilizing the imaging capillary isoelectric focusing (icIEF) technique. Initially, the charge variant profiles for three mAbs were assessed, revealing both major and minor variants among the samples. Specifically, mAB1 and mAB2 displayed two distinct charge variants with isoelectric points (pI) of 9.00 and 8.95, respectively. In contrast, mAB3 showed a predominant charge variant with a pI of 8.50, along with two minor variants (pI values of 8.30 and 8.60). The conjugation of mAB1 involved a maytansine derivative using non-cleavable linkers, while mAB2 and mAB3 were linked to tomaymycin molecules. The resulting non-cleavable antibody conjugates exhibited greater heterogeneity and acidity than their unconjugated forms. The observed pI ranges were 7.4 to 8.9 for mAB1 conjugates (∆pI: 1.4), 8.2 to 8.9 for mAB2 (∆pI: 0.7), and 7.4 to 8.4 for mAB3 (∆pI: 1). The icIEF method proved effective for tracking the charge profiles of antibody-drug conjugates (ADCs), showing excellent repeatability for both intra-day and inter-day measurements for unconjugated mAbs and ADCs.
KEYWORDS: Monoclonal Antibodies, Conjugates, icIEF, Charge Variant Profile.
INTRODUCTION:
Antibody-drug conjugates (ADCs) have demonstrated significant promise of targeted therapeutics, particularly effective in treating various diseases, notably cancer1. The FDA's approval of ozogamicin in 2000 heralded the emergence of ADCs as viable antitumor agents for acute myeloid leukemia (AML)2. Since that time, the field has rapidly evolved, with 14 ADCs currently approved for different cancer types and over 100 more in clinical trials3.
ADCs leverage the specificity of antibodies to selectively target antigens found on tumor cells, delivering potent cytotoxic agents designed to destroy cancer cells4. These cytotoxic drugs are chemically attached to monoclonal antibodies (mAbs) through linkers, which can be classified as either cleavable or non-cleavable3-7. Cleavable linkers release the cytotoxic agent in response to specific conditions within the tumor microenvironment, such as enzymatic activity or pH variations3-7. In contrast, non-cleavable linkers necessitate complete enzymatic degradation of the mAb to release the cytotoxic compound3-7. The use of non-cleavable linkers can offer benefits like longer plasma half-lives and diminished off-target toxicity3-7.
The conjugation of drug molecules to mAbs typically involves cysteine (Cys) and lysine (Lys) residues, resulting in a complex and heterogeneous mixture that includes various species with differing drug-to-antibody ratios (DAR) and conjugation sites4. Due to this complexity, thorough characterization of ADCs is crucial for ensuring batch consistency8. Charge variant characterization is an important technique in assessing the quality of ADCs9.
Charge variant profiles function as distinctive markers for evaluating the consistency and stability of ADC batches9-10. Established methods such as ion exchange chromatography10-13 and capillary isoelectric focusing (cIEF)14-16 are commonly used to analyze these profiles by separating proteins based on their isoelectric point (pI). Imaged cIEF (icIEF) stands out for its reliability, sensitivity, resolution, and reproducibility in determining and quantifying protein pI. Additionally, icIEF facilitates real-time monitoring of charge variant separation, offering valuable insights into ADC stability and heterogeneity8,17.
Maytansine derivatives and tomaymycin are often utilized as potent cytotoxic agents in ADC formulations. Maytansine derivatives work by inhibiting tubulin polymerization in cancer cells, thereby disrupting cell division18. Tomaymycin, an antibiotic derived from Streptomyces achromogenes, also demonstrates significant antitumor properties19.
This study aims to characterize the charge variant profiles of maytansine derivatives and tomaymycin conjugated to mAbs using a non-cleavable linker, employing the icIEF method developed in previous research20.
MATERIALS AND METHODS:
Materials:
The ICE280 chemical test kit and ICE280 electrolyte solution kit were sourced from Convergent Bioscience. Methylcellulose was obtained in concentrations of 1% and 0.5%, along with pI markers of 6.61, 7.05, 8.18, and 9.5, also from Convergent Bioscience. Pharmalyte solutions with pH ranges of 3-10 and 8-10.5 were acquired from GE Healthcare. Furthermore, urea, sucrose, histidine, and phosphoric acid were purchased from Sigma.
mAbs and ADCs:
In this research, we examined three monoclonal antibodies: mAB1 and mAB2, which target EphA2, and mAB3, which targets CD19. Initially, we prepared unconjugated solutions of these antibodies at an approximate concentration of 10mg/mL in a phosphate buffer with a pH of 6.5. Following this step, mAB1 was conjugated to maytansinoid compounds, while mAB2 and mAB3 were linked to tomaymycin derivatives. The attachment of these cytotoxic agents to the monoclonal antibodies was performed using a non-cleavable linker. For the formulation of antibody-drug conjugates (ADCs), they were suspended in a buffer containing 10 mM histidine, 10% sucrose, and N-methyl-2-pyrrolidone (NMP) at a pH of 6.5, reaching an approximate concentration of 2mg/mL.
Sample preparation:
To prepare the samples of monoclonal antibodies (mAbs) and antibody-drug conjugates (ADCs), they were diluted to reach the desired final concentrations. The dilution was carried out in a solution containing 0.35% methylcellulose, a combination of 4% pharmalytes (with pH ranges of 3-10 and 8-10.5 in a 1:1 ratio), and 2M urea. pI markers with isoelectric points of 6.61, 8.81, 7.05, and 9.5 were also added to the mixture.
Following preparation, the samples were centrifuged at 6000rpm for 3 minutes to remove any particulate matter. The clarified samples were then transferred to glass autosampler vials, where a second centrifugation was performed to eliminate any remaining air bubbles. Finally, the prepared samples were loaded into the autosampler carousel for further analysis.
icIEF instrument:
In this research, icIEF method was performed using an iCE280 instrument paired with a PrinCE autosampler, both supplied by Convergent Bioscience. The analysis utilized a capillary column measuring 50mm in length, with an inner diameter (ID) of 100µm and an outer diameter (OD) of 200µm. This transparent capillary column was housed in a glass cartridge, and its inner surface was coated with a fluorocarbon material to reduce electroosmotic flow.
For the analysis of antibody-drug conjugates (ADCs) and monoclonal antibodies (mABs), a cathodic solution of 100mM NaOH and 0.1% methylcellulose was used, alongside an anodic solution containing 80mM H3PO4 and 0.1% methylcellulose. The protein focusing duration was set to either 7 (naked mABs) or 10 minutes (ADCs), during which a voltage of 3000V was applied. Detection of the focused proteins was carried out using a CCD camera set to a wavelength of 280nm.
RESULTS AND DISCUSSION:
Charge variants represent a major source of heterogeneity in the production of therapeutic mABs and ADCs3-7. This variability stems from modifications that occur during cell culture, purification, and formulation processes. Proper characterization of the charge variant profile is crucial for ensuring the purity of therapeutic mAbs and ADCs and maintaining consistency between batches. The main objective of this study was to analyze the charge variant profile of unconjugated mAbs.
Charge variant profile of unconjugated mAbs:
This study thoroughly characterized the charge variant profiles of three mAbs. The mAbs analyzed included mAB1 and mAB2, which are anti-CD19 antibodies targeting the CD19 cell surface antigen, and mAB3, an anti-EphA2 antibody specifically designed to bind to EphA2. The charge heterogeneity of these mAbs was assessed using the icIEF method, with the results illustrated in Figure 1. Notably, mAB1 and mAB2 exhibited greater charge heterogeneity and a more basic profile compared to mAB3.
Typically, the charge profile of a mAb includes major species along with minor ones that are either more acidic or more basic21-22. Figure 2 further illustrates the percentage area occupied by charge variants for the three mAbs analyzed.
mAB1 showed two distinct charge variants with pI values of 9.00 (64%) and 8.95 (36%), resulting in a ΔpI of 0.1. Conversely, mAB2 presented three charge variants (ΔpI: 0.3), with the two primary peaks at pI values of 9.00 (60%) and 8.95 (30%). These observations are consistent with previous research on charge variant profiles in therapeutic mAbs. The presence of a more acidic variant in mAB1 and mAB2 (pI 8.95) compared to the major variant (pI 9.00) may be linked to the deamidation of one or two asparagine (Asn) residues, resulting in a shift in the pI value11,23.
For mAB3, three charge variants were identified (ΔpI: 0.3), with a major variant at a pI of 8.5(85%) and two minor peaks at pI values of 8.3(13%) and 8.6(7%). The presence of a more acidic variant (pI 8.3) relative to the main species (pI 8.5) may also be attributed to deamidation, while the more basic variant (pI 8.6) could be influenced by the presence of a C-terminal lysine, as suggested by prior studies indicating that C-terminal lysine contributes to the formation of basic species11-24.
The intra- and inter-day repeatability of the icIEF profiles for the mAbs demonstrated strong consistency in pI values (RSD% values below 0.26%) and in the percentage area occupied by charge variants (RSD% values below 8%). Detailed findings are summarized in Table 1.
Figure 1: Illustratation of the analysis conducted using icIEF to assess the charge variant profile of unconjugated mABs. The final concentration of the unconjugated mABs in the sample matrix was 0.2 mg/mL, and they were diluted in a solution of 0.35% methyl cellulose. Other conditions were mentioned in the materials and methods.
Figure 2. Representation of the area percentage of charge variants observed in the studied unconjugated antibodies.
Table 1. Statistical results of intra- day and inter-day repeatability of icIEF profile of mABs.
|
Inter- day repeatability (n=6, 3 day) |
||||||||
|
Major charge species |
pI |
Area% |
pI |
Area% |
||||
|
Mean |
RSD% |
Mean |
RSD% |
Mean |
RSD% |
Mean |
RSD% |
|
|
mAB1
|
8.95 |
0.2 |
34% |
3 |
8.95 |
0.25 |
35% |
4 |
|
9.00 |
0.25 |
64% |
3 |
9.00 |
0.20 |
65% |
4 |
|
|
mAB2 |
8.95 |
0.15 |
30% |
5 |
8.95 |
0.16 |
31% |
6 |
|
9.00 |
0.17 |
60% |
5 |
9.00 |
0.18 |
60% |
6 |
|
|
mAB3 |
8.5 |
0.2 |
85% |
6 |
8.5 |
0.1 |
86% |
7 |
Charge variant profile of non-cleavable ADCs:
The characterized monoclonal antibodies (mABs) were conjugated through the amino groups of lysine residues to maytansine derivatives for mAB1, and to tomaymycin for mAB2 and mAB3, using a cleavable linker (see Figure 3).
Figure 3. Showcases the structure of non-cleavable maytansinoid ADCs (DM4-NHAc-(PEG)4) in panel (A) and non-cleavable tomaymycin ADCs (tomaymycin-pyridine-(PEG)4) in panel (B).
The charge variant profiles of antibodies conjugated to non-cleavable maytansine and tomaymycin are shown in Figure 4. Our analysis indicated that these non-cleavable conjugated antibodies displayed increased levels of heterogeneity and acidity compared to their unconjugated counterparts.
Figure 4. Illustration of the analysis conducted using icIEF for the evaluation of (a) the non-cleavable maytansinoid mAB1 conjugate and (b, c) the non-cleavable tomaymycin mAB2 conjugate. The experiments were conducted under specific conditions, including a final concentration of 0.5 mg/mL in 0.35% methyl cellulose. Other conditions were mentioned in materials and methods.
Figure 5 provides a detailed analysis of the percentage area occupied by charge variants in the non-cleavable antibody-drug conjugates (ADCs). The pI ranges for the non-cleavable maytansinoid mAB1 conjugate were found to be between 7.4 and 8.9 (ΔpI: 1.4). In contrast, the non-cleavable tomaymycin mAB2 and mAB3 conjugates showed pI ranges of 8.2 to 8.9 (ΔpI: 0.7) and 7.4 to 8.4 (ΔpI: 1), respectively.
The observed increase in charge heterogeneity among the non-cleavable conjugates, as indicated by the broader ΔpI values, along with the lower pI values of the isoforms, can be attributed to the number of drugs linked to the free amino groups of lysine (Lys) residues in the antibodies. Specifically, the non-cleavable maytansinoid mAB1 conjugates had a greater number of charge variants (14) compared to the tomaymycin conjugates (8 for mAB2 and 9 for mAB3). This variation can be explained by the differing availability of lysine residues for conjugation in each mAb, with antibodies typically containing up to 80 lysine residues25-30.
The charge variants in the ADCs originated from the different numbers of amine groups on the lysine residues that were conjugated to the linker-drug. This modification led to a reduction in pI values as the number of modified amino groups increased, contributing to a more acidic profile of the ADC species. Similar observations have been documented for mAb conjugates26, 41-50. It's important to note that the percentages of charge isoforms corresponding to the unconjugated antibodies were relatively low, indicating a successful conjugation process for the mAbs.
Figure 5. % Area of major charge variant of non-cleavable conjugated antibody.
Table 2. Statistical results of intra- day and inter-day repeatability of icIEF profile of ADCs.
|
Intra- day repeatability (n=6) |
Inter- day repeatability (n=6, 3 day) |
|||||||
|
Major charge species |
pI |
Area% |
pI |
Area% |
||||
|
Mean |
RSD% |
Mean |
RSD% |
Mean |
RSD% |
Mean |
RSD% |
|
|
Maytansinoid mAB1 conjugates
|
8.3 |
0.2 |
7% |
3 |
8.3 |
0.25 |
7% |
3 |
|
8.4 |
0.25 |
11%% |
3 |
8.4 |
0.20 |
10.5% |
2 |
|
|
8.5 |
0.1 |
15% |
2 |
8.5 |
0.25 |
15.5% |
5 |
|
|
8.6 |
0.1 |
13% |
5 |
8.6 |
0.1 |
13.1% |
4 |
|
|
8.7 |
0.2 |
11% |
4 |
8.7 |
0.25 |
11.2% |
3 |
|
|
8.8 |
0.2 |
7% |
3 |
8.8 |
0.1 |
6,8% |
2 |
|
|
Tomaymycin mAB2 conjugates
|
8.5 |
0.2 |
5% |
6 |
8.5 |
0.27 |
5% |
6 |
|
8.55 |
0.15 |
16% |
2 |
8.55 |
0.17 |
16.1% |
2 |
|
|
8.6 |
0.17 |
20% |
2 |
8.6 |
0.18 |
29.9% |
2 |
|
|
8.7 |
0.25 |
22% |
3 |
8.7 |
0.29 |
21.95% |
3 |
|
|
8.8 |
0.1 |
17% |
4 |
8.8 |
0.15 |
17.01% |
4 |
|
|
Tomaymycin mAB3 conjugates
|
7.8 |
0.15 |
5% |
5 |
7.8 |
0.15 |
5.1% |
4 |
|
7.9 |
0.17 |
11% |
5 |
7.9 |
0.18 |
11.2% |
3 |
|
|
8.1 |
0.25 |
26% |
5 |
8.1 |
0.28 |
25.6% |
5 |
|
|
8.3 |
0.1 |
17% |
5 |
8.3 |
0.15 |
17% |
4 |
|
|
8.4 |
0.1 |
10% |
3 |
8.4 |
0.16 |
10% |
3 |
|
The icIEF (isoelectric focusing) profile of the antibody-drug conjugates (ADCs) demonstrated excellent repeatability, both within the same day and over multiple days, as evidenced by the low relative standard deviation (RSD%) values. The RSD% for the pI (isoelectric point) values was below 0.26%, reflecting high precision in measuring the pI of the charge variants. Furthermore, the RSD% for the area percentage occupied by charge variants was under 7%, indicating consistent and reliable quantification of the various charge species in the ADCs. Detailed results on repeatability are provided in Table 2.
CONCLUSION:
We utilized the icIEF (isoelectric focusing) method to analyze the charge variant profiles of three monoclonal antibodies (mAbs) along with their corresponding non-cleavable conjugates. A comparison of the profiles among the unconjugated mAbs indicated that mAB3 had a more acidic and homogeneous profile, with its primary charge variant exhibiting a pI of 8.50. In contrast, mAB1 and mAB2 displayed two charge variants, with pIs of 9.00 and 8.95, respectively. During the conjugation process, mAB1 was linked to a maytansine derivative via a non-cleavable linker, while mAB2 and mAB3 were conjugated to tomaymycin molecules. The resulting non-cleavable conjugated antibodies showed greater heterogeneity and acidity compared to their unconjugated counterparts. These results underscore the utility of icIEF as an effective tool for monitoring the charge profiles of antibody-drug conjugates (ADCs). Additionally, the pI and area percentage values for both the unconjugated mAbs and ADC charge variants exhibited strong repeatability both within and across different days.
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41. Thallaj N. Microwave-Assisted Synthesis of Oxadiazole and Thiazolidine Derivatives. Indian Journal of Advanced Chemistry, 1, 3, 2022. 10-14. DOI:10.54105/ijac.d2015.102222.
42. Thallaj N. Quick Review of Chemistry Related to the [Fe]- Hydrogenases. International Journal of Advanced Pharmaceutical Sciences and Research (IJAPSR) 2022; 2(4): 1-15. DOI:10.54105/ijapsr.C4016.062422.
43. Thallaj N. A Short Review of Some Examples of the Binding of Fullerenes C60 to Transition Metal Complexes. International Journal of Advanced Pharmaceutical Sciences and Research (IJAPSR) 2022. 2,6, 1-12. DOI: 10.54105/ijapsr.C4015.102622.
44. Thallaj N. Review of a Few Selected Examples of Intermolecular Dioxygenases Involving Molecular Oxygen and Non-Heme Iron Proteins. International Journal of Advanced Pharmaceutical Sciences and Research (IJAPSR) 2023. 3, 2, 1-18. DOI:10.54105/ijapsr.C4011.023223.
45. Thallaj N. A Brief Overview of the General Characteristics and Reactivity Towards Dioxygen of the Ferrous Tris (2-Pyridylmethyl Amine) Series Complexes is Presented. International Journal of Advanced Pharmaceutical Sciences and Research (IJAPSR) 2023. 3, 3, 1-18. DOI:10.54105/ijapsr.C4012.043323.
46. Thallaj N. Detecting Antioxidant Behavior for Phenolic Content of Some Beauty Care Creams in Syrian Market. Indian Journal of Advanced Chemistry. 2024; 2(1): 10–14, Jan., doi: 10.54105/ijac.C2013.041322.
47. Thallaj NK, Mandon D, White KA. The Design of Metal Chelates with a Biologically Related Redox‐Active Part: Conjugation of Riboflavin to Bis (2‐pyridylmethyl) amine Ligand and Preparation of a Ferric Complex Eur. J. of Inorg. Chem., 2007: 44–47. https://doi.org/10.1002/ejic.200600789.
48. Wane A, Thallaj NK, Mandon D. The Reactivity of Molecular Dioxygen on a Series of Isostructural Dichloroferrous Complexes with Tripodal Tetraamine Ligands: General Access to µ-oxo Diferric Complexes, and Effect of α-Fluorination on the Kinetics of the Reaction. Chemistry A European Journal 14 (22), 6742-6753. https://doi.org/10.1002/chem.200701967
49. Abbood A, Thallaj N. Comparison between chromatofocusing and icIEF charge variant profiles of unconjugated monoclonal antibodies and their drug conjugates. Arab Journal of Pharmaceutical Sciences. 2023: 7; (1).
50. Thallaj N. Characterization of charge heterogeneity of antibody -drug conjugate by anion-exchange chromatofocusing. Tishreen University Journal-Medical Sciences Series. 2023; 44 (6):21-29.
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Received on 22.05.2024 Revised on 12.08.2024 Accepted on 21.10.2024 Published on 20.01.2025 Available online from January 27, 2025 Research J. Pharmacy and Technology. 2025;18(1):185-190. DOI: 10.52711/0974-360X.2025.00028 © RJPT All right reserved
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