Exploring the potency of new Pyridopyrimidine derivatives: Synthesis and biological evaluation

 

Sravani Koralla, Asha Deepti Choppala*

GITAM School of Pharmacy, GITAM (Deemed to be University), Visakhapatnam, India – 530045.

*Corresponding Author E-mail: achoppal@gitam.edu

 

ABSTRACT:

Pyridopyrimidines are fused heterocyclic compounds that have gained significant attention in medicinal chemistry due to their diverse pharmacological activities. These compounds exhibit structural similarity to purines, making them valuable scaffolds for the development of bioactive molecules, particularly in anticancer drug discovery. New  Substituted 2,4-diphenyl-12a,13-dihydro-5H-pyrido[2',3':4,5]pyrimido[2,1-b]quinazoline-5,7(12H)-dione (8a-h) derivatives were synthesized and evaluated for their anti-cancer activity. The corresponding pyrido [2, 3-d] pyrimidine derivatives (8a-h) were also synthesized from  starting materials. Docking studies were performed and revealed that the synthesised compounds have similar binding modes against the prospective biological targets. The newly synthesized compounds have shown low to moderate reducing activity in the MTT assay.

 

KEYWORDS: Pyridopyrimidines, MTT assay, Anti-cancer activity.

 

 


INTRODUCTION: 

The biological significance of heterocyclic molecules has interesting synthetic objectives in drug design and discovery for several years. New pyrido-pyrimidines are a category of heterocyclic compounds that have advantageous benefits in the treatment of many disorders. Several pyridopyrimidine derivatives1 have demonstrated potent anticancer properties by targeting key cellular pathways such as tyrosine kinase inhibition, DNA intercalation, and apoptosis induction. Their ability to interfere with cancer cell proliferation, migration, and survival has positioned them as promising candidates for therapeutic development.

 

Recent studies have explored the structure-activity relationships of pyridopyrimidines, leading to the synthesis of novel derivatives with enhanced selectivity and efficacy against various cancer cell lines. Given their promising biological profile, further research is warranted to optimize pyridopyrimidine-based anticancer agents2 for clinical application. Many pyridine derivatives were reported to have anti-bacterial3, Anti-Alzheimer4, anti-platelet5 and anti-cancer activities6. The general structure of the parent compound was shown in Figure 1.

 

 

Figure 1: General structure of Pyridopyrimidine derivative

 

MATERIALS AND METHODS:      

All chemicals, including standard drugs and solvents were obtained from Sigma-Aldrich, HiMedia, India and used without further purification with the exception of liquid aldehydes which were purified prior to use using standard procedures. The melting points of all compounds were measured using the VEEGO VMP-D Digital melting point apparatus. The FTIR spectra were obtained using JASCO FTIR 4100 series and are reported in cm-1. TMS was used as an internal standard to measure signals from 1H NMR and 13C NMR spectra on a BRUKER-II 400 (400 MHz NMR, 13C NMR 100 MHz) spectrophotometer. To test the purity of the compounds, pre-coated TLC plates were used, and spots were visualised using iodine vapours and ultraviolet rays. Elemental analyses were performed using a CHN-VarioElico Micro elemental analyzer. The anti-cancer activity studies  were estimated using commercially available test kits (Sigma-Aldrich).

 

PROCEDURE:

Synthesis of 2-Thioxopyrimidine (3)

A mixture of urea (1; 0.12 mol), ethyl 2-cyanoacetate (2; 0.1 mol) were refluxed in ethanol for 10 hours with stirring in the presence of sodium ethanoate. The reaction mixture was kept at room temperature for overnight. The crude precipitate resulted in was filtered, washed with cold ethanol and dried to produce the desired   product (3).

 

Synthesis of chalcone (6)

Synthesis of Chalcones was carried out by using Aldol condensation. A mixture of   Acetophenone (4; 0.1mol; 5ml) and Benzaldehyde (5; 0.1mol; 5ml) were taken in round bottom flask with stirring in the presence of base NaOH as a catalyst.  The reaction mixture was kept at 0-20℃ temperature for 12 hours. The progress of the reaction was monitored byTLC.  The reactant mixture was acidified with HCl in an ice bath and the solid was then filtered and crystallized by ethanol.

 

Synthesis of 2,3-dihydro-2-thioxo-5,7- diarylpyrido [2,3-d]pyrimidin-4(1H)-one (7a-g)  

2-Thioxopyrimidine 3 (1.43 g, 0.01 mol) and of ά-β-unsaturated ketones (6, 0.01 mol) in dry DMF solution (20 ml) was refluxed for 18–20 h and progress of the reaction was monitored by TLC. The solid mass created on cooling was filtered and crystallized from (DMF) to give the 2,3-dihydro-2-thioxo-5,7- diarylpyrido[2,3-d]pyrimidin-4(1H)-one (7).

 

Synthesis of 2-hydrazinyl -5,7- diarylpyrido[2,3-d]pyrimidin-4(3H)-one (8a–g)  

2,3-dihydro-2-thioxo-5,7- diarylpyrido[2,3-d]pyrimidin-4(1H)-ones derivatives  (7a-p; 0.004 mol) and hydrazine reagent (3 ml, 0.006 mol) was refluxed in absolute ethyl alcohol (20 ml) for 10–15 h. On cooling, the residue created was filtered and purified from (DMF).

 

Anti-cancer activity

The anticancer activity of new pyrimidine derivatives which have been found for their wide range of biological properties, including their anticancer qualities, is assessed using the in-vitro MTT test. The anticancer activity against three cell lines—MCF-7 (breast cancer), HeLa (cervical carcinoma), and MDA-MB-231 (breast cancer)—in vitro was evaluated for the synthesized compounds to assess their biological efficacy. The previously described MTT (3-(4, 5-dimethyl thiazol-2yl)-2, 5-diphenyl tetrazolium bromide) test was used for the evaluation. First, 96-well microtiter plates were filled with 1,105 cells per millilitre, and the plates were incubated for the entire night in minimally needed media that was enhanced with foetal bovine serum. Dimethyl sulfoxide (DMSO) was used to dissolve the compounds, resulting in a final concentration of 0.1M. The samples were then successively combined with the whole medium to yield test concentrations of 0.001, 0.01, 0.1, 1.0, and 10 micromolar (uM). For 96 hours, the MCF-7 breast cancer cells were cultivated in a 96-well plate and exposed to different doses of the test chemicals at 37°C. A 5% CO2 concentration was used to control the environment's pH. The cells were then incubated for an additional four hours after being exposed to MTT reagent. Carefully, the medium and MTT solutions above each well were eliminated. A deep blue formazan substance was generated by the cells and dissolved in 100 milliliters of DMSO. A 96-well plate reader was used to detect absorbance at a particular wavelength of 570 nm in order to assess the vitality of the cells. Plotting the percentage inhibitions versus the concentrations required to obtain the IC50 values was done using the methods that was supplied.23

                     OD Control- OD treated

% Inhibition =  ------------------------------- X 100     

                            OD Control

 

RESULTS AND DISCUSSION:

Pyrimidine is a particularly helpful framework for developing anticancer drugs. Its molecules have demonstrated remarkable effectiveness in a number of ways, such as the inhibition of angiogenesis, the disruption of cell migration, the activation of cell cycle arrest, the control of nuclear receptor responsiveness, and the regulation of apoptosis-induced cell growth. Pyrimidine derivatives have been shown to be effective against a wide range of cancer cell lines, including those from colorectal, lung, breast, colon, and renal malignancies. The synthetic route of Pyrido-pyrimidine quinazoline derivatives was shown in Scheme 1. The IR spectra, NMR spectra and the Mass spectra of compound 8e and 8g were shown in Figure 2 and Figure 3 respectively. The spectral interpretation was summarized in Table 1.

 


 

Scheme 1: Synthetic route of Pyridopyrimidine quinazoline derivatives

 

 

 

IR Spectrum

 

1HNMR Spectrum

 

Mass Spectrum

Figure 2: Representative spectra of (8e): 2-(4-bromophenyl)-4-(3,4-difluorophenyl)-9-fluoro-12a,13-dihydro-5H-pyrido[2',3':4,5]-pyrimido[2,1-b]-quinazoline-5,7(12H)-dione

 

 

IR Spectrum

 

1HNMR Spectrum

 

Mass Spectrum

Figure 3: Representative spectra of (8g): 8-bromo-2-(3-chlorophenyl)-4-(2,4-difluorophenyl)-12a,13-dihydro-5H pyrido[2',3':4,5]pyrimido[2,1-b]quinazoline-5,7(12H)-dione

Table 1: Characterisation of Pyridopyrimidine derivatives

Compound code

Yield

(%)

Melting Point,

TLC Rf

IR Spectral study

1HNMR Spectral study (DMSO)

400MHz CDCl3

8a

56

160-162

0.9

3103cm-1 Ar (C-H)

2922cm-1  Ali(C-H)

3443cm-1Amide(N-H)

1590cm -1Ar(c=c)

724 cm -1(C-F)

1184 cm -1(c-o)

δ 8.51 (s, 1H, amide)

δ 7.77-7.81 (m, 2H, Ar-H)

δ 7.40-7.47 (m,2H, Ar-H)

δ 7.63-7.68 (m, 2H, Ar-H)

δ 7.95-8.00 (d, 1H, Ar-H)

δ 7.89-7.91 (d, 1H, Ar-H)

δ 2.63 (s, 3H, hydrazinyl)

8b

68

190-192

0.5

3451cm-1 (NH, Amide)

3065cm-1 Ar (C-H)

2952 cm-1Ali (C-H)

1725 cm-1 (C=O)

1525cm-1 Ar (C=C)

728cm-1 (C-F)

δ 8.54 (s, 1H, amide)

δ 7.92-7.96 (d, 1H, Ar-H)

δ 7.82-7.84 (d, 1H, Ar-H)

δ 7.70-7.75 (m, 2H, Ar-H)    δ 7.62-7.68 (m, 2H, Ar-H)

δ 2.68  (s, 3H, hydrazinyl)

8c

85

135-137

0.8

3451 cm-1  (NH, amide)

3083 cm-1Ar (C-H)

2958 cm-1(C-H)

1598 cm-1Ar (C=C)

720 cm-1 ( C-F)

δ 8.56 (s, 1H, amide)

δ 7.93-7.95 (d,1HAr-H)

δ 7.80-7.82 (d, 1H,Ar-H)

δ 7.74-7.79 (m, 3H, Ar-H)

δ 2.69 (s, 3H, hydrazinyl)

8d

60

158-160

0.4

3401 cm-1 (NH, amide), 3091cm-1(C-H,Ar),

2968cm-1(C-H,Ali), 1728cm-1(C=O)

1590cm-1 (C=C,Ar)

1180 cm-1 (C-O)

760 cm-1  ( C-Cl)

δ 8.58 (s, 1H, amide)

δ 7.92-7.94 (d, 1H,Ar-H)

δ 7.82-7.84 (d, 1H,Ar-H)

δ 7.75-7.79 (m, 3H, Ar-H)

δ 7.62-7.68 (m, 2H, Ar-H)

δ 2.65 (s, 3H, hydrazinyl)

8e

74

148-150

0.5

3440 cm-1 (NH,amide)

3068 cm-1  (C-H, Ar), 2924 cm-1 (C-H, Ali), 1726 cm-1 (C=O),

1592 cm-1  (C=C, Ar), 1124 cm-1 (C-O),

728 cm-1 ( C-F).

δ 8.59 (s, 1H, amide),

δ 7.92-7.94 (d, 1H,Ar-H)

δ 7.85-7.87 (d, 1H, Ar-H),  δ7.73-7.78 (m, 2H, ArH),

δ7.62-7.68 (m, 2H, Ar-H),

δ 7.40-7.45 (m,2H, Ar-H),

δ 2.60 (s, 3H, hydrazinyl)

8f

54

140-142

0.8

3401 cm-1  (NH, amide),

3060 cm-1 (C-H, Ar), 2952 cm-1 (C-H, Ali), 1720 cm-1 (C=O),

1520 cm-1(C=C, Ar), 1260 cm-1 (C-O)

628 cm-1 ( C-Br)

δ 8.59 (s, 1H, amide)

δ 7.96-7.98 (d, 1H, Ar-H)

δ 7.86-7.88 (d, 1H, Ar-H),

δ 7.75-7.79 (m, 2H, Ar-H),

δ 7.66-7.69 (m, 2H, Ar-H),

δ 7.40-7.44 (m,2H, Ar-H),

δ 2.62 (s, 3H, hydrazinyl)

8g

54

180-182

0.6

3420 cm-1  (NH, amide)

3061 cm-1  (C-H, Ar), 2929 cm-1 (C-H, Ali), 1726 cm-1  (C=O),

1592 cm-1 (C=C, Ar), 1124 cm-1  (C-O),

728 cm-1 (C-F).

δ 8.65 (s, 1H, amide),

δ 7.90-7.92 (d, 1H,Ar-H)

δ 7.86-7.88 (d, 1H Ar-H),

δ 7.73-7.78 (m, 2H, Ar-H),

δ 7.62-7.68 (m, 2H, Ar-H),

δ 7.40-7.45 (m,2H, Ar-H),

δ 2.62 (s, 3H, hydrazinyl);

 


Evaluation of Anti-cancer activity

The effect of  new  substituted 2,4-diphenyl-12a,13-dihydro-5H-pyrido[2',3':4,5]pyrimido[2,1-b]quinazoline -5,7(12H)-dione (8a-g) derivatives for the evaluation of anti-cancer activity (Table 2). The anti-proliferative activity for breast cancer cell line (MDA-MB-231), cervical carcinoma cell line (HeLa), breast cancer cell line (MCF-7) was evaluated for the synthesized compounds. It was found that among all the compounds 8a containing  pyrido[2,3-d]-pyrimidine fused with 2,4-difluorophenyl  and flouro phenyl  substituted  moiety showed potent  cytotoxic activity at low concentration with IC50 value 1.12 ± 0.03μM, 1.50 ± 0.12μM, 1.95 ± 0.12μM and compound 8g containing 8-bromo-2-(3-chlorophenyl)-4-(2,4-difluorophenyl)-12a,13-dihydro-5H-pyrido[2',3':4,5]pyrimido[2,1-b]quinazoline-5,7(12H)-dione showed good anti-cancer activity 1.89 ± 0.18 μM, 1.98 ± 0.02μM, 1.78 ± 0.12μM against breast cancer cell line (MDA-MB-231), cervical carcinoma cell line (HeLa), breast cancer cell line (MCF-7).   The Compound 2-(4-bromophenyl) and 3,4-difluorophenyl) fused with pyrido[2,3-d]-pyrimidine (8e) showed enhancing the anti-cancer activity with  IC50 value of  2.02 ± 0.14μM, 2.15 ± 0.18μM and 2.20 ± 0.20μM against breast cancer cell line (MDA-MB-231), cervical carcinoma cell line (HeLa), breast cancer cell line (MCF-7). Compounds 8d showed less potent anti-cancer activity compared to standard drug.  Our findings indicated that several synthesized products demonstrated moderate to significant growth suppression efficacy on the investigated cell lines at doses ranging from 0.001 to 10 μM, in comparison to the reference anticancer medication Cisplatin.


Table 2: Anti-cancer activity of new substituted 2,4-diphenyl-12a,13-dihydro-5H-pyrido [2',3':4,5] pyrimido [2,1-b] quinazoline-5,7(12H)-dione (8a-g)

Compound

code

R

R1

R2

MDA-MB-231

IC50 (μM)

HELa

IC50 (μM)

MCF-7

IC50 (μM)

8a

4-F

2,4 di flouro

H

1.12±0.03

1.50±0.12

1.95±0.12

8b

4-F

2,4 di bromo

4-Cl

3.10±0.20

3.30±0.10

3.90±0.15

8c

4-F

4-NO2

5-Br

3.48±0.10

3.51±0.23

3.86±0.13

8d

4-F

3-Cl

5- Cl

5.34±0.42

5.52±0.12

6.05±0.13

8e

4-Br

2,4 di flouro

4-F

2.02±0.14

2.15±0.18

2.20±0.20

8f

4-Br

2,4 di bromo

H

2.82±0.13

2.96±0.23

3.10±0.12

8g

3-Cl

2,4 di flouro

5-Br

1.89±0.18

1.98±0.02

1.78±0.12

 

Cisplatin

1.14±0.05

0.95±0.02

1.02±0.22

16

 

 

 


CONCLUSIONS:

New  Substituted 2,4-diphenyl-12a,13-dihydro-5H-pyrido[2',3':4,5]pyrimido[2,1-b]quinazoline-5,7(12H)-dione (8a-g) were synthesized, characterized and evaluated for their anti-cancer activity. The corresponding pyrido [2, 3-d] pyrimidine derivatives (8a-g) were also synthesized from starting materials. In the MTT assay, the synthesized compounds showed low to moderate reducing activity. However, the majority of the compounds presented potent anti-cancer activity, with the most potent being pyrimidine derivatives. The compounds 8a containing  pyrido[2,3-d]-pyrimidine fused with 2,4-difluorophenyl  and flouro phenyl  substituted  moiety showed potent  cytotoxic activity at low concentration with IC50 value 1.12±0.03μM, 1.50±0.12μM, 1.95±0.12μM and compound 8g containing 8-bromo-2-(3-chlorophenyl)-4-(2,4-difluorophenyl)-12a,13-dihydro-5H-pyrido[2',3':4,5]pyrimido[2,1-b]quinazoline-5,7(12H)-dione showed good anti-cancer activity 1.89±0.18μM, 1.98±0.02μM, 1.78±0.12μM against breast cancer cell line (MDA-MB-231), cervical carcinoma cell line (HeLa), breast cancer cell line (MCF-7).  Thus, they could be further investigated as multifunctional molecules.

 

REFERENCES:

1.      Kumar A, Bhagat KK, Singh AK, et al. Medicinal chemistry perspective of pyrido [2,3-d]pyrimidines as anticancer agents. RSC Adv. 2023; 13(10): 6872-6908.

2.      Elzahabi HSA, Nossier ES, Khalifa NM, Alasfoury RA, El-Manawaty MA. Anticancer evaluation and molecular modeling of multi-targeted kinase inhibitors based on pyrido[2,3-d]pyrimidine scaffold. J Enzyme Inhib Med Chem. 2018; 33(1): 546-557.

3.      Elsherif MA. Antibacterial evaluation and molecular properties of pyrazolo[3,4-b]pyridines and thieno[2,3-b] pyridines. J. Appl. Pharm. Sci. 2021; 11: 118-124.

4.      Attaby FA Abdel-Fattah M, Shaif LM and Elsayed MM. Reactions, Anti-Alzheimer and Anti COX-2 Activities of the Newly Synthesized 2-Substituted Thienopyridines. Curr Org Chem 2009; 13: 1654-1663.

5.      Binsaleh NK, Wigley CA, Whitehead KA, Van Rensburg M, Reynisson J, Pilkington LI, Barker D, Jones S, DempseyHibbert NC. Thieno[2,3-b]pyridine derivatives are potent anti-platelet drugs, inhibiting platelet activation, aggregation and showing synergy with aspirin. Eur. J. Med. Chem. 2018, 143, 1997-2004.

6.      Abdelaziz ME, El-Miligy MMM, Fahmy SM, Mahran MA, Hazzaa AA. Design, synthesis and docking study of pyridine and thieno[2,3-b] pyridine derivatives anticancer PIM-1 kinase inhibitors. Bioorg. Chem. 2018; 80: 674-692.

 

 

 

Received on 08.11.2024      Revised on 20.01.2025

Accepted on 28.03.2025      Published on 10.04.2025

Available online from April 12, 2025

Research J. Pharmacy and Technology. 2025;18(4):1725-1730.

DOI: 10.52711/0974-360X.2025.00247

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