Molecular Docking and Synthesis of Sulfonylurea derivatives Targeting the Carbonic Anhydrase XII Enzyme as Potential Anticancer agents
Raghad Radwan1, Djamila Ben Hadda2, Amir Balash3, Mustapha Fawaz Chehna1.
1Department of Pharmaceutical Chemistry and Drug Control, Faculty of Pharmacy,
Aleppo University, Aleppo, Syria.
2Department of Pharmaceutical Chemistry and Drug Control, Faculty of Pharmacy,
Ebla University, Aleppo, Syria.
3Department of Pharmaceutical Chemistry and Drug Control, Faculty of Pharmacy,
Philipps University, Marburg, Germany.
*Corresponding Author E-mail: raghad.radwan.96@gmail.com
ABSTRACT:
Most studies indicate the importance role of CAs in cancer biology, particularly in regulation of the cancer microenvironment, oncogenic growth, and spread of malignant. The importance of our research is the synthesis of sulfonylurea compounds that inhibit the carbonic anhydrase isozyme XII, which is an important isozyme that plays a major role in progress of many cancers. Molecular modeling of studied compounds was carried out by Molegro virtual Docker (MVD) targeting carbonic anhydrase isozyme XII and binding energy calculated to select the most preferred compound. The highest binding energy of the studied compounds was -162.85 Kcal/mol (compound B2) comparing with the standard ligand -113.46kcal/mol and the reference ligand (AZM) -120.97kcal/mol. Several of these compounds were synthesized in a new way with good yields between 82.0-87.5% by reacting sulfonyl chloride derivatives with phenyl urea derivatives/urea in alkaline solution of acetone and TEA. The physicochemical characteristics and identification of synthesized compounds were determined by various analytical methods such as Ir spectro , Mass spectro and Nuclear resonance.
KEYWORDS: Sulfonylurea, Anticancer, Carbonic anhydrase XII isozyme, Molegro Virtual Docker, 4ww8, sulfonyl chloride derivatives, phenyl urea derivatives.
INTRODUCTION:
Cancer is one of the most important and widespread health condition in the world, regardless of its type1. It negatively impacts a patient’s quality of life and is one of the most common causes of death. Many drugs, treatments, and procedures have been discovered that can be used to treat cancer2,3,4, such as radiotherapy5 which destroys the DNA of malignant cells, immunotherapy6 and other therapeutic methods.
With the advancement of science and reaserch, there are now many targets that can play a significant role in the initation, progress, and even spread and metastasis of cancer.
One of these targets is carbonic anhydrase enzymes, as the tumor depends greatly on the PH intracellular and extracellular7, and the role of these enzymes in cancerous state is to provide the appropriate acidic environment for the oncogenic growth, and spread of malignant.
The role of carbonic anhydrase enzymes can be summarized by raising the PH intracellular to suit metabolic processes, and protecting cancer cells from death and also acidification of the extracellular milieu by decreasing PH value, which gives cancer cells an advantage and survival over normal cells that cannot live and adapt8,9.
CA XII belongs to the carbonic anhydrase family (CAs), it catalyzes the hydration of carbon dioxide to Hco3- and H+10,11. This process has a vital role in regulation of pH and CO2 levels in multiple organs and tissues. It is found in plasma membrane of cells, especially in kidney tissue, epithelial cells, and CNS. CA XII is a membrane-bound enzyme, and it has a Zn+2 in the active region, which is required for its activity. The expression and activity of this enzyme, in addition to the IX isozyme, increases in many cases, including hypoxia (low oxygen), which is the characteristic condition in tumors, so it’s an interesting target for therapeutic strategies in cancer 12,13,14,15.
Sulfonylurea derivatives are commonly used to treat type 2 diabetes, but many other therapeutic uses have been discovered, such as diuretics, anti-inflammatory agent, antitubercular activity, antimalarial activity, anticancer, and others16.
Sulfonylurea can be used as CA XII inhibitors which target the active region of CA XII by binding to the amino acids in the active site and ionic bond forming with Zn+2, then blockage of the bicarbonate obtaining process, and suppression of the catalyzing activity of CA XII17,18.
Finally, there are several approved methods to synthesis sulfonylureas, and a new method has been developed in our lab, at the University of Aleppo, department of pharmaceutical chemistry with good yield and economical cost, in addition to being a single step, so it is easy to apply.
Many research in our laboratory at the University of Aleppo, Faculty of Pharmacy, has focused on the synthesis of various new sulfonamide derivatives with different pharmaceutical uses, including anti-bacterial, anti-cancer, and EGFR-inhibitory19,20,21,22,23.
In this research, we have directed our efforts to design, develop and synthesize a novel sulfonylurea derivatives as potential anticancer and analyze them using many technical tools such as TLC, Ir spectro, mass spectro, and NMR to determine the structure of synthesized compounds.
Moreover, molecular modeling studies were done to determine the interaction of designed compounds with the target enzyme (carbonic anhydrase XII).
MATERIALS AND METHODS:
All of solvents and chemical materials were obtained from trusted source (Pro lab. For pharmaceutical industry). The enzyme code (PDB ID: 4WW8) has been downloaded from bank of protein data. The compounds were drawn and designed using the Marvin sketch program version 21.2 where the lowest energy conformer was selected, stored in molecular 2 format, and then applied to the Molegro Virtual Docker program (MVD) version 2022.5.5 to test their activity on the enzyme and to calculate the binding energy. The following devices were used to identify the compounds: Thin-layer separation method (tlc) with silica gel 60 F254 aluminum sheets (Macherey-Nagel Germany) to determine the Retardation Factor (RF) of materials, melting point of substance determined using BÜCHI Melting Point B-540 apparatus (BÜCHI Labortechnik, Switzerland), ATR-FTIR Bruker spectrophotometer (Bruker, Billerica, Massachusetts) to find out IR spectra, mass spectroscopy by using a mass spectrometer (Sciex, Framingham, USA), 1H-NMR, 13C-NMR spectroscopy by using an NMR spectrometer (Joel, Tokyo, Japan), operating at 500 MHz for 1H and 13C.
Procedure of synthesis:
Synthesis of p-methoxybenzenesulfonyl chloride:
0.2mol of chlorosulfonic acid (13.3ml) was added to 0.1 mol anisole (10.9ml). Then, the content of reaction was stirred for 1hour in ice bath, then the crushed ice was added to the reaction to give p-methoxybenzenesulfonyl chloride precipitate. The resulting material was collected using vacuum filtration and it was stored in the refrigerator to prevent melting.
Synthesis of p-acetamidobenzenesulfonyl chloride:
0.5mol of chlorosulfonic acid (33.3ml) was added to 0.1 mol acetanilide (13.5g) in cold-bath. Then, the content of reaction was stirred for 2hour at 60C°. The precipitate of the substance is obtained by pouring ice to the reaction mixture.
Synthesis of compound A1:
0.01mol of 1-(4-flourophenyl) urea (1.54g) was dissolved in 10ml of acetone, 0.01mol of p-methoxybenzenesulfonyl chloride (2.06g) was added to the solution, 0.2ml of tri-ethyl-amine was added to the mixture of reaction with stirring at 60C0 under reflux condition for 3hours. Reaction mixture was poured onto ice to produce a precipitate.
Synthesis of compound B4:
0.01mol of urea (0.6g) was dissolved in 10ml of acetone, 0.01mol of p-acetamidobenzenesulfonyl chloride (2.34g) was added to the solution, 0.2ml of tri-ethyl-amine was added to the mixture of reaction with stirring at 60C0 under reflux condition for 3hours. Reaction mixture was poured onto ice to produce a precipitate.
Synthesis of compound D1:
0.01mol of 1-(4-flourophenyl) urea (1.54g) was dissolved in 10ml of acetone, 0.01mol of p-acetamidobenzenesulfonyl chloride (2.34g) was added to the solution, 0.2ml of tri-ethyl-amine was added to the mixture of reaction with stirring at 60C0 under reflux condition for 3hours, then the acetyl in the resulting substance is hydrolyzed using hydrochloric acid (4M) and heated in a water bath at a 80-90C0 for two hours. After that, the reaction mixture is cooled and the PH is adjusted using sodium bicarbonate. The crystals are waited for and then the recrystallized using water and ethanol (50:50).
A1 B4 D1
Carbonic anhydrase XII structure:
Carbonic anhydrase XII enzyme plays a critical role in regulating bicarbonate levels in tissues and the balance of PH but in tumors CAXII is overexpressed and it modulates PH levels in a way that helps facilitate invasion and spread of malignant by promoting the breakdown of the extracellular matrix and evading immune responses. Therefore, inhibiting it can greatly help prevent the development of cancer and even its spread to other tissues and organs24,25.
The Protein data bank provided the Three-dimensional crystallized structure of carbonic anhydrase XII (pdb id:4ww8), which has a resolution of 1.42A0. It consists of four peptide chains A, B, C, D and 354 amino acids residues.
The crystallized structure includes 3 bound ligands: 4*ZN, 13*EDO, and 4*VD926.
Figure 1: Co-crystallized structure of the carbonic anhydrase XII (pdb:4ww8)
Docking studies:
Protein preparation:
The carbonic anhydrase XII protein was prepared by inserting it into the MVD program. A list of its amino acid residues is displayed, then any errors that may be present in the amino acid residues in the list are identified by colouring them in red or yellow. There are two types of possible errors that can occur in residues: deletion of atoms or errors in the bonds present in them. These faults are corrected to obtain the optimal structure of protein. In addition, Water molecules is removed from the protein’s crystal structure, the B chain was chosen to docking study, and the Zn+2 ion in the active region was retained as cofactor, and everything else was removed.
Figure 2: Carbonic anhydrase XII cavity
Parameters used:
As shown in the table 1: the following parameters were used in docking studies:
Table 1: the used parameters for docking studies
|
Parameters |
Value |
|
Cavity volume |
Cavity 1: 71.17 surface 212.48 |
|
Scoring function |
Moldoc Score {GRID} |
|
Grid resolution )Å( |
0.30 |
|
Binding side radius |
15 |
|
Searching-algorithm |
Moldock optimizer |
|
Number of runs |
10 |
|
Max iteration |
2000 |
|
Max population size |
50 |
|
Energy threshold |
100 |
|
Simplex evaluation max steps |
300 |
|
Neighbour distance factor |
1 |
|
Max number of poses returned |
5 |
Validation docking method:
Molecular modeling was carried out to find out the possibility of compounds A1-E4 to inhibition of the carbonic anhydrase XII enzyme and to calculate the binding energies. But before that, the appropriate protocol must be determined and its validity verified. A method was developed in which the ligand(VD9:4-propylthiobenzenesulfonamide) bonded to the crystallized structure (PDb id 4ww8) was re-docked and then calculating of the standard deviation (Rmsd). The value for the used method was 1.41, which is considered an acceptable value, as in computer-aided drug design, standard deviation of less than 2 A0 is considered good.
This validated protocol was then used to perform molecular docking for the compounds A1-E4 where they were all compound in the same active pocket as shown in the Figure 3.
Figure 3: All compounds binding with CAXII binding pocket
RESULTS AND DISCUSSIONS:
Chemistry:
The synthesis of the compounds A1, B4, D1 was carried out in an alkaline medium of acetone and TEA, as the acidic medium leads to protonation of the terminal amino group in the phenyl urea derivatives, and the weakening of its nucleophiles,TEA abstracts a proton from the terminal NH2 group of the urea/phenyl urea derivatives to form a nucleophilic NH-, then this nucleophilic NH- attacks the electrophilic sulfur in SO2Cl, displacing Cl-, the Cl- reacts with Et3NH+ to form salt (Et3NH+Cl-), and acetone acts as a polar, non-protic solvent
Figure 4: synthesis of sulfonylurea derivatives
Docking:
The designed compounds and the reference compound(AZM) were drawn using the Marvin sketch program, converted to molecular 2 format, and then docking with Molegro Virtual Docker (MVD).
All compounds were bound to the CA XII enzyme and given a good binding energies. Also, all applied compounds formed hydrogen bounds with enzyme’s residues and ionic bounds with the Zn+2 cofactor, with varied binding energies and bound distances. The binding-energies of all the compounds were higher than that of the native ligand and most of them had even higher binding-energies than the reference compound. Forming Hydrogen bound with Thr199 or Thr198 is essential for good binding energy with CA XII enzyme (pdb:4ww8) Forming more hydrogen bound with other enzyme’s residues gives an increase in binding energy, especially His93 and His91.
The compounds B1, B2, B3 have the highest binding energy with enzyme (158.20-162.85-153.74)Kcal/mol and this can be attributed to their formation of essential hydrogen-bonds with both Thr198, Thr199 and one of the amino acids which increases the energy His91 or His 93, and we note that the compounds A4, B4, C4, D4, E4 have the lowest binding energy among the studied compounds, and this may be due to the presence of a free urea group not attached to an aromatic ring, as the ring is formed steric interaction with many amino acids, which directly affects the energy. Compared to the standard compound, we note that the sulfonylurea group contributed significantly to increasing the binding energy by forming additional bonds with amino acids through S=O, NH, C=O groups and, of course, through the steric interactions it possesses.
Figure 5.6: Predicted binding positions of compound A1 and the interactions with amino acids residues in the binding poket of CAXII.
Table 2. Binding energies (Kcal/mol) of the studied compounds compared to the standard ligand (-113.46) Kcal/mol and the reference compound acetazolamide (-120.97) Kcal/mol.
|
compound |
Binding energies (Kcal/mol) |
compound |
Binding energies (Kcal/mol) |
compound |
Binding energies (Kcal/mol) |
|
A1 |
-146.75 |
B4 |
-132.67 |
D3 |
-125.38 |
|
A2 |
-131.97 |
C1 |
-143.93 |
D4 |
-118.55 |
|
A3 |
-148.29 |
C2 |
-140.95 |
E1 |
-149.79 |
|
A4 |
-119.12 |
C3 |
-138.63 |
E2 |
-149.48 |
|
B1 |
-158.20 |
C4 |
-118.32 |
E3 |
-146.97 |
|
B2 |
-162.85 |
D1 |
-144.36 |
E4 |
-115.60 |
|
B3 |
-153.74 |
D2 |
-126.14 |
|
|
Table 3. The interaction of studied compounds with amino acids of CA XII enzyme:
|
Ligand |
Residue |
Hydrogen bond |
Distance (A0) |
Energy |
Steric interaction |
|
Reference AZM |
Thr199
|
OH…SO(Ligand) NH…SO(Ligand) |
2.70 3.22 |
-1.24 -1.88 |
- |
|
Thr198 |
OH…NH(Ligand) |
3.35 |
-1.25 |
||
|
His93 |
N(imidazole)…NH(Ligand) |
3.19 |
-2.05 |
||
|
His91 |
N(imidazole)…NH(Ligand) |
2.85 |
-2.50 |
||
|
Standard |
Thr199
|
OH…SO(Ligand) NH…SO(Ligand) |
3.11 2.72 |
-2.47 -0.97 |
Thr198 |
|
Thr198 |
OH…NH(Ligand) |
2.94 |
-2.50 |
||
|
His93 |
N(imidazole)…NH(Ligand) |
2.96 |
-2.50 |
||
|
His91 |
N(imidazole)…NH(Ligand) |
3.05 |
-2.50 |
||
|
A1 |
Thr199 |
NH…CO(Ligand) OH…NH(Ligand) |
2.95 3.13 2.67 2.74 |
-0.69 -1.06 -2.50 -1.53 |
Gln89, Ser67, Asn64,Val141, His117, Leu197, Val119, His91 |
|
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) |
||||
|
A2 |
Thr198 |
OH…CO(Ligand) |
2.56 2.75 2.98 |
-2.13 -2.50 -2.50 |
Leu197, His91, Ser67, His93,Thr199 |
|
Tyr6 |
OH…SO(Ligand) |
||||
|
Ser67 |
OH…SO(Ligand) |
||||
|
A3 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) NH…SO(Ligand) |
2.83 3.28 3.15 3.26 |
-2.50 -0.88 -2.17 -1.68 |
His66, His91, Val141, Trp208, His117, Leu197, Val119,Thr199, His93 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
A4 |
Thr198 |
NH…CO(Ligand) OH…CO(Ligand) OH…SO(Ligand) NH…SO(Ligand) |
2.97 3.25 3.14 3.00 2.97 2.76 |
-2.29 -1.74 -2.30 -1.20 -2.50 -0.73 |
Trp208, His91, Thr199 |
|
Thr199 |
OH…SO(Ligand) NH…SO(Ligand) |
||||
|
B1 |
Thr198 |
OH…CO(Ligand) NH…SO(Ligand) |
2.69 2.71 3.25 2.99 |
-2.50 -2.50 -1.76 -1.82 |
Asn64, His66, His93, His117, Val119, Ser133, Thr199 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
His91 |
N(imidazole)…NH(Ligand) |
||||
|
B2 |
Thr198 |
NH…SO(Ligand) OH…SO(Ligand) OH…CO(Ligand) |
2.75 3.19 2.64 3.36 3.06 |
-2.50 -2.03 -2.50 -1.22 -1.38 |
Asn64, His117, His93, Thr199 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
His91 |
N(imidazole)…NH(Ligand) |
||||
|
B3 |
Thr198 |
NH…SO(Ligand) NH…CO(Ligand) OH…CO(Ligand) |
3.01 3.33 2.54 3.40 2.97 2.74 |
-2.50 -0.65 -1.65 -1.02 -2.39 -2.50 |
Asn64, His91, His93, His117, Thr198, Thr199 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
His93 |
N(imidazole)…NH(Ligand) |
||||
|
Gln89 |
NH…CO(Ligand) |
||||
|
B4 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) OH…SO(Ligand) NH…SO(Ligand) |
3.25 2.96 3.14 2.97 2.97 2.75 |
-1.73 -2.30 -2.28 -1.20 -2.50 -0.76 |
His91, Trp208, Thr199 |
|
Thr199 |
OH…SO(Ligand) NH…SO(Ligand) |
||||
|
C1 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) OH…SO(Ligand) |
2.95 3.08 2.47 2.78 |
-2.50 -2.50 -1.41 -2.50 |
Leu197, Val119, Thr199, Asn64, His91 |
|
Thr199 |
OH…SO(Ligand) |
||||
|
C2 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) NH…SO(Ligand) |
2.95 3.35 2.96 3.15 2.97 |
-1.52 -0.66 -2.44 -2.26 -2.43 |
His66, His117, Trp208, Leu197, Val119, His93, Thr199 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
His91 |
N(imidazole)…NH(Ligand) |
||||
|
C3 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) OH…SO(Ligand) |
3.02 3.02 2.39 2.83 |
-2.50 -2.48 -0.79 -2.50 |
Leu197, Val119, Thr199, Asn64, His91 |
|
Thr199 |
OH…SO(Ligand) |
||||
|
C4 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) |
3.05 3.08 2.98 |
-2.50 -2.47 -2.27 |
His91, Thr199, Ser67 |
|
Thr199 |
OH…SO(Ligand) |
||||
|
D1 |
Thr198 |
OH…SO(Ligand) NH…SO(Ligand) |
3.26 2.76 3.16 |
-1.71 -2.50 -1.66 |
Ser67, Asn64, Gln89, Thr199, His117, Trp208, Thr198, Leu197, Val119, His91 |
|
Thr199 |
OH…NH(Ligand) |
||||
|
D2 |
Thr198 |
OH…CO(Ligand) |
2.52 2.83 3.01 |
-1.19 -1.60 -1.06 |
Thr198,Thr199, His91, His93, Ser67 |
|
Tyr6 |
OH…SO(Ligand) |
||||
|
Ser67 |
OH…SO(Ligand) |
||||
|
D3 |
Thr198 |
OH…CO(Ligand) |
2.80 3.24 2.72 2.97 |
-2.00 -1.43 -1.40 -1.09 |
Val141, Trp208, His91, Ser67, Asn64, His93, Thr199 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
Tyr6 |
OH…SO(Ligand) |
||||
|
Ser67 |
OH…SO(Ligand) |
||||
|
D4 |
Thr198 |
NH…CO(Ligand) OH…SO(Ligand) NH…SO(Ligand) |
3.10 3.12 2.95 3.01 2.76 |
-2.26 -2.42 -1.22 -2.50 -0.76 |
Trp208, Thr199, His93, Asn64 |
|
Thr199 |
OH…SO(Ligand) NH…SO(Ligand) |
||||
|
E1 |
Thr198 |
OH…SO(Ligand) NH…SO(Ligand) OH…CO(Ligand) |
3.28 2.68 2.58 3.46 3.07 |
-1.60 -2.50 -2.37 -0.68 -1.45 |
Thr199, His66, His93 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
His91 |
N(imidazole)…NH(Ligand) |
||||
|
E2 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) NH…SO(Ligand) |
2.88 3.32 3.00 3.21 2.98 |
-2.50 -0.77 -2.45 -1.92 -2.19 |
His66, His117, Val141, Trp208, Leu197, Val119, Thr199 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
His91 |
N(imidazole)…NH(Ligand) |
||||
|
E3 |
Thr198 |
OH…CO(Ligand) NH…CO(Ligand) NH…SO(Ligand) |
3.00 3.34 3.02 3.13 |
-2.50 -0.70 -2.39 -2.35 |
Thr199, His93, His66, Val141, Trp208, Val119, Leu197, His91, His117 |
|
Thr199 |
OH…CO(Ligand) |
||||
|
E4 |
Thr198 |
NH…CO(Ligand) OH…SO(Ligand) NH…SO(Ligand) |
2.97 3.16 3.00 2.95 2.75 |
-2.29 -2.21 -1.19 -2.50 -0.75 |
Trp208, Thr199, His91 |
|
Thr199 |
OH…SO(Ligand) NH…SO(Ligand) |
Analytical Data:
Compound A1:
1‐(4‐fluorophenyl) ‐3‐(4‐methoxybenzenesulfonyl) urea
White powder, yield 87.5%, melting point 182-186C0, tlc: the solvent system was ethyl acetate: petrolatum ether 2.5:7.5, and the retention factor for compound A1 is 0.32. Ir spectro (vmax, cm-1): 3417 (N-H), 3052 (C-H aroma), 1654(C=O), 1410(C-H), 1357(S=O), 1230(C-O).1H NMR spectro (DMSO-d6, δ, ppm) δ 9.80 (s, 1H, N-H), 7.85 (d, 2H, Ar-H), 7.47 (dd, 2H Ar-H), 7.18 (d, 2H, Ar-H), 7.10 (t, 2H, Ar-H), 6.40 (s, 1H, N-H), 3.73 (s, 1H, C-H). 13C-NMRspectro (DMSO-d6, δ, ppm): 162.11, 157.97, 156.29, 137.29, 127.47, 126.61, 132.66 – 106.55, 119.82, 118.37, 115.53, 56.91. Mass spectrum (m/z, ESI): showed molecular ion (M+H) + peak at 325.15 representing C14H14FN2O4S. and (M+Na) peak at 347.22, and its fragments are 154.27, 172.19, 186.85.
Compound B4:
N‐{4‐[(carbamoylamino)sulfonyl] phenyl} acetamide
White powder, yield 84.5%, melting point 212-216 C0, tlc: the solvent system was ethyl acetate: petrolatum ether 8.0:2.0, and the retention factor for compound B4 is 0.32. Ir spectro (vmax, cm-1): 3416 (N–H), 3050 (C–H aroma), 1662 (C=O), 1402 (C-H), 1322 (S=O). 1H NMR spectro (DMSO-d6, ppm) 10.31 (s, 1H, N-H), 7.77 (d, 2H, Ar-H), 7.62 (d, 2H, Ar-H), 6.60 (s, 2H, NH2), 5.97 (s, 1H, N-H), 2.06 (s, 3H, C-H). 13C-NMR spectro (DMSO-d6, δ, ppm): 169.56, 155.65, 143.82, 129.14, 118.96, 39.77, 25.20. Mass spectrum (m/z, ESI): showed molecular ion (M+H) + peak at 258.18 representing C9H11N3O4S. and (M+Na) peak at 280.09, and its fragments are 198.21, 122.05.
Compound D1:
3‐(4‐aminobenzenesulfonyl) ‐1‐(4‐fluorophenyl) urea Light violet crystals, yield 82.0%, melting point 193-197 C0, tlc: the solvent system was ethyl acetate: petrolatum ether 8.0:2.0, and the retention factor for compound D1 is 0.43. Ir spectro (vmax, cm-1): 3413(N–H), 1635(C=O urea), 1335 (S=O).1H NMR spectro (DMSO-d6, δ, ppm) δ 8.58 (s, 1H, N-H), 8.01 (d, 2H, Ar-H), 7.57 – 7.43 (m, 2H, Ar-H), 7.36 (dd, 2H, Ar-H), 7.07 – 6.93 (m, 2H, Ar-H), 6.19 (s, 2H, NH2), 5.79 (s, 1H, N-H).13C-NMR spectro (DMSO-d6, δ, ppm): 158.35, 156.57, 137.29, 127.47, 126.61, 119.77, 115.60, 115.43. Mass spectrum (m/z, ESI) showed molecular ion (M+H) + peak at 310.25 representing C13H12FN3O3S. and (M+Na) peak at 332.18, and its fragments 155.10, 177.10.
CONCLUSION:
The above article describes the characterization and synthesis of new sulfonylurea derivatives as anticancer drugs by potentially targeting the carbonic anhydrase XII enzyme. New sulfonylurea derivatives were synthesized in good yields and by a simple and easy method by reacting (sulfonyl chloride) derivatives with phenyl urea derivatives in a medium of acetone and TEA.
The structures of these compounds were identified using 13C and 1H NMR, IR, and Mass spectro. The efficiency of the designed and synthesized compounds was determined by docking them into the CA XII (pdb:4ww8) binding cavity using MVD program (Molegro Virtual Docker). The binding energies of these compounds were calculated and compared with the energy of the reference ligand.
Based on these results, we found that all of the designed and synthesized compounds have higher binding-energies than the native ligand and some of them have higher binding-energies than acetazolamide due to the formation of hydrogen-bonds and additional steric interactions with the amino acids within the enzyme.
Finally, there is of course a need for more research to evaluate the effectiveness of these compounds as anti-cancer drugs by inhibiting the CA XII enzyme, and we hope that this study will give the desired effectiveness and promising results.
ACKNOWLEDGMENTS:
The authors of this article thank the Department of Pharmaceutical Chemistry, Faculty of pharmacy, university of Philipps, Marburg, Germany, for the analysis of the synthesized compounds using 13C and 1H NMR, and Mass spectroscopy.
CONFLICTS OF INTEREST:
The authors of the article declare no conflicts of interest regarding the publication of this paper.
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Received on 28.04.2025 Revised on 18.08.2025 Accepted on 24.11.2025 Published on 20.05.2026 Available online from May 25, 2026 Research J. Pharmacy and Technology. 2026;19(5):2075-2081. DOI: 10.52711/0974-360X.2026.00298 © RJPT All right reserved
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