Author(s): Atheer Ahmed Majeed, Mohmmed Lefta Atala, Wsnaa Juma Mohammed

Email(s): genomatheer@yahoo.com

DOI: 10.5958/0974-360X.2021.00063.9   

Address: Atheer Ahmed Majeed1*, Mohmmed Lefta Atala1, Wsnaa Juma Mohammed2
1Department of Biology, College of Sciences, University of Baghdad.
2Basic Sciences Department, College of Nursing, University of Baghdad.
*Corresponding Author

Published In:   Volume - 14,      Issue - 1,     Year - 2021


ABSTRACT:
In the present investigations pretended one highly fluoride ion (F) tolerant bacterial strains like Streptococcus mutans MAW was isolated from Iraqi dental patients. The study focuses on a new bacterial fluoride resistance gene that contribute to each of the main virulence defenses to surviving in the oral cavity. The study showed same bacteria was developed fluoride resistance ways using model from hypothetic genes over lapping kind, it confirmed as SNARE -associated domain family genes of cell wall. Material and methods: It was detected by the potential function resistant at 2000 ppm/ml sodium fluoride, which appeared highest level of resistance among four gradient levels of concentrations. The amplification was identified the hypothetic gene of fluoride-resistant using specific primer. Results: The FRAM gene was sequenced with a length 400 bp comparing with NCBI database. The qRT- PCR results had been appeared high expression of FRAM gene in extra level was 5.25-fold compared with control. The sequencing analysis led to detect a new mutant gene for resistance has identity 49% in NCBI database. The result submitted a new Streptococcus mutans MAW (Gen Bank Acc. LC431527) was correlated in genetic distance neighborhood with other fluoride resistance genes of NCBI strains. Conclusion: It was concluded that fluoride exporter confers fluoride resistance to oral S. mutans MAW. The sequencing analysis was able to explain genetic converting in chromosome lead to a fluoride-resistant strain. These explorations can providea new insights into a new mechanism of microbial F+ resistance mutations.


Cite this article:
Atheer Ahmed Majeed, Mohmmed Lefta Atala, Wsnaa Juma Mohammed. Exploration of a new Fluoride resistance gene (FRAM gene) in oral Streptococcus mutans MAW. Research J. Pharm. and Tech. 2021; 14(1):344-350. doi: 10.5958/0974-360X.2021.00063.9

Cite(Electronic):
Atheer Ahmed Majeed, Mohmmed Lefta Atala, Wsnaa Juma Mohammed. Exploration of a new Fluoride resistance gene (FRAM gene) in oral Streptococcus mutans MAW. Research J. Pharm. and Tech. 2021; 14(1):344-350. doi: 10.5958/0974-360X.2021.00063.9   Available on: https://www.rjptonline.org/AbstractView.aspx?PID=2021-14-1-63


REFERENCES:
1.    Yoshida A, Kuramitsu HK. Multiple Streptococcus mutans Genes Are Involved in Biofilm Formation. Apply of Environment Microbiology, 2002;68(12):6283–91.
2.    Jeffrey S. McLean. "Advancements toward a systems level understanding of the human oral microbiome "Frontiers in Cellular and Infection Microbiology, 2014;4(98).
3.    Chen F, Wang D."Novel technologies for the prevention and treatment of dental caries: a patent survey". Expert Opin Ther Patients. 2010 ;20(5):681–94.
4.    Ten Cate JM. "Fluorides in caries prevention and control: Empiricism or science". Caries Research. 2004; 38(3):254–7.
5.    Van Loveren C, Liao Y, Brandt BW, Crielaard W, Li J, Deng DM. "Fluoride resistance in Streptococcus mutans : a mini review" . Journal Oral of Microbiology. 2017;9(1):1344509. Available from: https://doi.org/10.1080/20002297.2017.1344509.
6.    Jenny L. Baker, Narasimhan Sudarsan, Zasha Weinberg, Adam Roth, Randy B. Stockbridge, and Ronald R. Breaker" Widespread Genetic Switches and Toxicity Resistance Proteins for Fluoride". Science, 2014; 9(1):233–5.
7.    Breaker RR. "New insight on the response of bacteria to fluoride". Caries Research. 2012;46(1):78–81.
8.    Najar F, Zhu H, Mc Shan WM, Lin S, Savic G, White J, et al." Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen". Proceedings of the National Academy of Sciences of the United States of America. 2002;99(22):14434–9.
9.    Johnson ZI, Chisholm SW. "Properties of overlapping genes are conserved across microbial genomes". Genome Research. 2004;14(11):2268–72.
10.    Browning DF, Busby SJW. "The regulation of bacterial transcription initiation". Nature Reviews Microbiology. 2004;2(1):57–65.
11.    Igarashi T, Yamamoto A, Goto N." Direct detection of Streptococcus mutans in human dental plaque by polymerase chain reaction". Oral Microbiol Immunology. 1996 ;11(5): 294-8.
12.    Chansley PE, Kral TA. "Transformation of fluoride resistance genes in Streptococcus mutans". Infection Immunology. 1989;57(7):1968–70.
13.    Atheer A.M. "Coloning and overexpression of Lactobacillus acidophilus bile salt hydrolase gene A (bshA) in Escherichia coli". MSc. thesis, Kahraman Marash sutcu Imam University, Turkey. 2014.
14.    Rice KC, Turner ME, Carney O V, Gu T, Ahn S. "Modification of the Streptococcus mutans transcriptome by LrgAB and environmental stressors". Nature Reviews Microbiology Genome Journal. 2017; 28;3(2): e000104.
15.    Saitou N, Nei M. "The Neighbor-joining Method: A New Method for Reconstructing Phylogenetic Trees". 1987;4(4):406–25.
16.    Felsenstein J. Phylogenies and the Comparative Method. The American Naturalist. 2002;125(1):1–15.
17.    Bustin SA. “Absolute quantification of mRNA using real-time PCR”. Journal of Molecular Endocrinology .2000; 25, 169–193.
18.    Yilmaz A, Ilke H, Alp E, Menevse S. “Real-Time PCR for Gene Expression Analysis”. Polymerase Chain React. 2012;12: 229-254.
19.    Choi J, Treglown JS, Huang Y-CC, Ellen RP, Senadheera MD, Spatafora GA, et al. “A VicRK Signal Transduction System in Streptococcus mutans Affects gtfBCD, gbpB, and ftf Expression, Biofilm Formation, and Genetic Competence Development “. Journal of Bacteriology, 2005;187(12):4064–76.
20.    Stockbridge RB, Weinberg Z, Williams C, Lim H-H, Otten R, Shane T, et al. Fluoride resistance and transport by riboswitch-controlled CLC antiporters. Proceedings of the National Academy of Sciences of the United States of America, 2012;109(38):15289–94.
21.    Sylva GL, Smoot JC, Musser JM, Sturdevant DE, Smoot LM, Somerville GA, et al. “Global differential gene expression in response to growth temperature alteration in group A Streptococcus sp”. Proceedings of the National Academy of Sciences of the United States of America, 2002;98(18):10416–21.
22.    Wesolowski J, Paumet F. “SNARE motif: A common motif used by pathogens to manipulate membrane fusion”. Virulence, 2010;1(4):319–24.
23.    W PA, Rippert P, Puyaubert J, Grisollet D, Derrier L, Matringe M. “Tyrosine and Phenylalanine Are Synthesized within the. American Society of Plant “Biologists, 2009;149 :1251–60.
24.    Luo H, Lin Y, Gao F, Zhang C, Zhang R. DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements. Nucleic Acids Research, 2014;42:574–80.
25.    Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, et al. “Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20”. Journal of Bacteriology, 2003;185(15):4593–602.
26.    Akerley BJ, Rubin EJ, Novick VL, Amaya K, Judson N, Mekalanos JJ. “A genome-scale analysis for identification of genes required for growth or survival of Haemophilus influenza”. PNAS,2001;99(2):966-71.
27.    Leelananda SP, Kloczkowski A, Jernigan RL. “Fold-specific sequence scoring improves protein sequence matching. BMC Bioinformatics”. BMC Bioinformatics, 2016; 17:328
28.    Sander C, Marks DS, Hopf TA, Colwell LJ, Pagnani A, Sheridan R, et al. “Protein 3D Structure Computed from Evolutionary Sequence Variation”. PLoS One. 2011;6(12): e28766.
29.    Jia K, Jernigan RL. “SeqStruct : A New Amino Acid Similarity Matrix Based on Sequence Correlations and Structural Contacts Yields Sequence-Structure Congruence. Bio Rxiv”. Jernigan Laboratory, 2018 .
30.    Greener JG, Sternberg MJ. “Structure-based prediction of protein allostery”. Currentopine Structure Biology. 2018;50: 1–8. http://dx.doi.org/10.1016/j.sbi.2017.10.002
31.    Victoria A. Feher, Jacob Durrant , Adam T. Van Wart1, and Rommie E. Amaro Computational approaches to mapping allosteric pathways . NIH Public Access. 2015;9629: 98–103.
32.    Liao Y, Chen J, Brandt BW, Zhu Y, Li J, Van C. “Identification and Functional Analysis of Genome Mutations in a Fluoride-Resistant Streptococcus mutans Strain”. Plos one ,2015;1–13.
33.    Tatusov RL, Galperin MY, Natale DA, Koonin E V. “The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic acid research” BMC Evolutionary Biology, 2000; 28(1):33–6.
34.    Sabath N, Graur D, Landan G. “Same-strand overlapping genes in bacteria: compositional determinants of phase bias”. Biology Direction ,2008;10:1–10.
35.    Lane O. “Stability and evolution of overlapping genes”. Evolution, 2000; 54(3):731–739.
36.    Frishman D. “What we have learned about prokaryotes from structural genomics”. OMICS, 2003; 7, 211–224.
37.    Thomas,G.H. “Completing the E.coli proteome: a database of gene products characterized since the completion of the genome sequence”. Bioinformatics, 1999;15: 860-861.
38.    Vytautas P., ius,a Justas Vaiteku_ nas,a Jonita Stankevicˇiu_ te˙ ,a Renata Gasparavicˇiu_ te˙ ,a Rolandas M. ,. “Catabolism of 2-Hydroxypyridine by Burkholderia sp. Strain MAK1: a 2-Hydroxypyridine 5-Monooxygenase Encoded by hpd ABCDE Catalyzes the First Step of Bio-degradation”. Applied and Environment Microbiology Journal, 2018; 84 (11): 1-15.
39.    Warrington JA, Nair A, Mahadevappa M, Clara S, Janet A, Nair A, et al. “Comparison of human adult and fetal expression and identification of 535 housekeeping / maintenance genes”. Physiological Genomics ,2000;2:143–147.
40.    Vandesompele J, Preter K De, Poppe B, Roy N Van, Paepe A De. “Accurate normalization of real-time quantitative RT -PCR data by geometric averaging of multiple internal control genes”. Genome Biology, 2002;3 (7):1–12.
41.    Livak KJ, Schmittgen TD.” Analysis of Relative Gene Expression Data Using Real- Time Quantitative PCR and the 22DDCT Method”. Methods. 2001;25: 402-408.
42.    Shemesh, M.; Tam, A.; Feldman, M.; Steinberg, D. “Differential expression profiles of Streptococcus mutans ftf, gtf and vicR genes in the presence of dietary carbohydrates at early and late exponential growth phases”. Carbohydrates. Research. 2006, 341, 2090–2097
43.    Volz K. “A test case for structure-based functional assignment: The 1.2 Å crystal structure of the yjgF gene product from Escherichia coli”. Protein Science, 2009;8(11):2428–37.
44.    Pitre S, Dehne F, Chan A, Cheetham J, Duong A, Emili A, et al. “PIPE: A protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs”. BMC Bioinformatics. 2006;7(365):1–15.
45.    Sprinzak E, Sattath S, Margalit H. “How Reliable are Experimental Protein – Protein Interaction”. Journal of Molecular. Biology,2003; 327: 919–923.
46.    Xenarios I. “DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions”. Nucleic Acids Research. 2002;30(1):303–5.
47.    Bujnicki JM. “Protein-structure prediction by recombination of fragments”. Chemical Bio-Chemistry. 2006;7(1):19–27.
48.    George A. Khoury, Adam L., Firas K., Hongyi Z., Gaurav C., Jaume etal. “WeFold: A Coopetition for Protein Structure Prediction”. Proteins, 2014;71(11):3831–40.
49.    Forssten SD, Björklund M, Ouwehand AC. “Streptococcus mutans caries and simulation models”. Nutrients. 2010;2(3):290–298.
50.    Streckfuss JL, Horton IM, Dreizen S, Brown LR, White JO. “Effect of Continuous Fluoride Gel Use on Plaque Fluoride Retention and Microbial Activity”. Journal Dentistry Research. 2010;62(6):746–51.
51.    Maglott D, Ostell J, Pruitt KD, Tatusova T. “Entre gene: Gene-centered information at NCBI”. Nucleic Acids Research, 2011;35:26–31.
52.    R. Khan, H. V. Rukke, H. Høvik, H. A. Åmdal, T. Chen,b D. A. Morrison,c F. C. Petersena . “Comprehensive Transcriptome Profiles of Streptococcus mutans UA159 Map Core Streptococcal Competence Genes”. Systems TM ,2016;1 (2): e00038-15.
53.    Carricato WM, Castilla EE, Noel JB, Vieira AR, Schulhof LP, Weyant RJ, et al. “Detection of Streptococcus mutans Genomic DNA in Human DNA Samples Extracted from Saliva and Blood”. ISRN Dentistry. 2011; 1–6.
54.    Pmb H, Agnol D, Baraúna RA, Sá PHCG De, Ramos RTJ, Nóbrega F, et al. “Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation.” BMC Genomics; 2014;1–12.

Recomonded Articles:

Research Journal of Pharmacy and Technology (RJPT) is an international, peer-reviewed, multidisciplinary journal.... Read more >>>

RNI: CHHENG00387/33/1/2008-TC                     
DOI: 10.5958/0974-360X 

1.3
2021CiteScore
 
56th percentile
Powered by  Scopus


SCImago Journal & Country Rank


Recent Articles




Tags


Not Available